Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACAM37_RS09485 Genome accession   NZ_AP031595
Coordinates   2148310..2149533 (-) Length   407 a.a.
NCBI ID   WP_128680796.1    Uniprot ID   -
Organism   Moraxella sp. K23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2143310..2154533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM37_RS09465 (MOXK23_18380) - 2144139..2145242 (+) 1104 WP_138018411.1 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase -
  ACAM37_RS09470 (MOXK23_18390) - 2145312..2146718 (+) 1407 WP_065253798.1 nicotinate phosphoribosyltransferase -
  ACAM37_RS09475 (MOXK23_18400) coaE 2146776..2147432 (-) 657 WP_239743400.1 dephospho-CoA kinase -
  ACAM37_RS09480 (MOXK23_18410) pilD 2147429..2148304 (-) 876 WP_369626090.1 A24 family peptidase Machinery gene
  ACAM37_RS09485 (MOXK23_18420) pilC 2148310..2149533 (-) 1224 WP_128680796.1 type II secretion system F family protein Machinery gene
  ACAM37_RS09490 (MOXK23_18430) pilB 2149590..2151296 (-) 1707 WP_369626091.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACAM37_RS09495 (MOXK23_18440) tpiA 2151715..2152554 (+) 840 WP_369626092.1 triose-phosphate isomerase -
  ACAM37_RS09500 (MOXK23_18450) secG 2152645..2152965 (+) 321 WP_353551321.1 preprotein translocase subunit SecG -
  ACAM37_RS09515 (MOXK23_18460) rimP 2153529..2154038 (+) 510 WP_369626093.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44842.82 Da        Isoelectric Point: 9.7054

>NTDB_id=110562 ACAM37_RS09485 WP_128680796.1 2148310..2149533(-) (pilC) [Moraxella sp. K23]
MAKVQTEMLLDFVYDGVNRRGEKVKGETTSRNIELAKAQLRKQGIQVKTIKKKPKPIFQMKKSIKAIDIAIFVRQLATMM
KAGVPLTQSFEIVADALDNPSMKELVLSVKSEVESGSTFAAALRKHPRYFDDLFCSLVEAGEQSGALETMLERVATYKEK
SELLKAKIKKALKYPIAVIVVAIIVTIILLVKVVPVFADLFNSFGAELPAFTRMVVSMSEWMQKWWWLLLFSIAGAVVGF
SEAKKRSKPFNDFLDRLTLKLPIFGNIAYQAVVARFSRTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQKIKGDVATG
QQLQFSMRSTNLFPSMAIQMVGIGEESGSLEEMLDKVATYYENEVDNAVDGLTSLMEPMIMAILGVLVGGLVIAMYLPIF
QMGSVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=110562 ACAM37_RS09485 WP_128680796.1 2148310..2149533(-) (pilC) [Moraxella sp. K23]
ATGGCAAAAGTCCAAACAGAAATGTTATTAGACTTTGTCTATGATGGGGTCAATCGCCGTGGCGAGAAAGTTAAAGGCGA
AACCACTAGCCGCAATATTGAGCTGGCAAAGGCGCAACTACGTAAGCAGGGCATCCAAGTCAAGACGATTAAGAAAAAAC
CTAAGCCTATTTTTCAAATGAAAAAAAGCATCAAGGCAATCGATATTGCTATCTTTGTGCGGCAGTTGGCTACGATGATG
AAAGCGGGCGTGCCTCTTACTCAGTCGTTTGAAATCGTTGCAGATGCGCTCGATAACCCCTCGATGAAAGAGTTGGTGCT
TAGTGTCAAGTCAGAAGTGGAATCAGGTAGCACCTTTGCTGCAGCGCTGCGCAAACATCCCAGATATTTTGATGACTTGT
TTTGTTCATTAGTAGAAGCAGGTGAGCAGTCGGGCGCGCTTGAAACTATGCTTGAGCGTGTCGCGACGTACAAAGAAAAA
AGCGAGCTACTAAAAGCAAAAATTAAAAAAGCCTTGAAATACCCGATTGCGGTTATCGTGGTTGCCATTATCGTTACCAT
TATTTTGCTGGTCAAAGTGGTACCGGTGTTTGCTGATTTATTCAATTCATTTGGCGCAGAGTTACCCGCGTTTACCCGAA
TGGTAGTCAGTATGTCGGAGTGGATGCAAAAATGGTGGTGGTTATTGCTATTTAGCATTGCAGGCGCTGTGGTTGGCTTT
TCTGAAGCTAAAAAACGCAGCAAGCCCTTTAATGATTTTTTAGACCGACTGACCTTAAAATTACCAATCTTTGGCAACAT
TGCTTATCAAGCGGTGGTTGCCCGTTTTTCCCGCACCTTGTCTACCACTTTTGCCGCAGGTGTGCCGCTGATTGATGCGT
TAGATTCAACTGCTGGGGCAACCAACAATGTGGTGTTTTATAATGCCACGCAAAAAATTAAAGGCGATGTTGCGACGGGT
CAACAGCTGCAGTTTTCGATGCGTTCTACCAATCTTTTTCCCAGTATGGCGATCCAAATGGTTGGTATTGGTGAGGAGTC
AGGTAGTCTAGAGGAGATGCTTGATAAAGTGGCGACTTATTATGAAAACGAAGTGGATAACGCCGTAGACGGGTTAACAA
GTCTGATGGAACCGATGATTATGGCTATTTTGGGGGTGCTGGTAGGGGGTCTAGTGATTGCCATGTATCTACCAATTTTC
CAAATGGGCTCGGTGGTGGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

70.343

100

0.705
  pilC Acinetobacter baylyi ADP1

68.873

100

0.69
  pilC Pseudomonas stutzeri DSM 10701

64.304

97.052

0.624
  pilC Legionella pneumophila strain ERS1305867

56.14

98.034

0.55
  pilG Neisseria gonorrhoeae MS11

44.361

98.034

0.435
  pilC Vibrio cholerae strain A1552

43.382

100

0.435
  pilG Neisseria meningitidis 44/76-A

44.11

98.034

0.432
  pilC Vibrio campbellii strain DS40M4

41

98.28

0.403
  pilC Thermus thermophilus HB27

35.337

100

0.361

Multiple sequence alignment