Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACAM37_RS09480 Genome accession   NZ_AP031595
Coordinates   2147429..2148304 (-) Length   291 a.a.
NCBI ID   WP_369626090.1    Uniprot ID   -
Organism   Moraxella sp. K23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2142429..2153304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM37_RS09460 (MOXK23_18370) nfuA 2143223..2143840 (-) 618 WP_050324879.1 Fe-S biogenesis protein NfuA -
  ACAM37_RS09465 (MOXK23_18380) - 2144139..2145242 (+) 1104 WP_138018411.1 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase -
  ACAM37_RS09470 (MOXK23_18390) - 2145312..2146718 (+) 1407 WP_065253798.1 nicotinate phosphoribosyltransferase -
  ACAM37_RS09475 (MOXK23_18400) coaE 2146776..2147432 (-) 657 WP_239743400.1 dephospho-CoA kinase -
  ACAM37_RS09480 (MOXK23_18410) pilD 2147429..2148304 (-) 876 WP_369626090.1 A24 family peptidase Machinery gene
  ACAM37_RS09485 (MOXK23_18420) pilC 2148310..2149533 (-) 1224 WP_128680796.1 type II secretion system F family protein Machinery gene
  ACAM37_RS09490 (MOXK23_18430) pilB 2149590..2151296 (-) 1707 WP_369626091.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACAM37_RS09495 (MOXK23_18440) tpiA 2151715..2152554 (+) 840 WP_369626092.1 triose-phosphate isomerase -
  ACAM37_RS09500 (MOXK23_18450) secG 2152645..2152965 (+) 321 WP_353551321.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32305.85 Da        Isoelectric Point: 8.1744

>NTDB_id=110561 ACAM37_RS09480 WP_369626090.1 2147429..2148304(-) (pilD) [Moraxella sp. K23]
MVLILDFVLLLQQSQWLTLLMVSILGLCVGSFLNVVIYRTPLMMEQQWKNECQLLLHPESVIDHHESMTLSRPASRCPHC
GHSIRWFENMPVISWLLLKGKCSQCHHAISYRYPLVEIITAILSVLVVMKFGVTWQALAGLVLTWTLVALTGIDFDTQLL
PDRFTLPLAGLGLFVNAFGLFVSPTAAIFGYVFGFLCLWIVYQLFLLITGKHGMGHGDFKLLAALGAWLGPLMLPLVVLL
SAFVGSVVGVILMKRSGESKPFAFGPYIAIAGMIALLYGQSIMSWYLGKMS

Nucleotide


Download         Length: 876 bp        

>NTDB_id=110561 ACAM37_RS09480 WP_369626090.1 2147429..2148304(-) (pilD) [Moraxella sp. K23]
ATGGTATTGATTTTAGATTTTGTATTATTATTACAGCAGTCGCAATGGCTTACCTTGCTCATGGTATCAATCTTGGGCTT
GTGTGTGGGTAGTTTTTTAAATGTGGTGATTTATCGCACGCCTTTGATGATGGAGCAGCAGTGGAAGAACGAATGCCAGC
TATTGCTTCATCCAGAAAGCGTTATTGACCATCATGAATCGATGACCTTAAGCCGTCCTGCTTCTCGTTGCCCGCATTGT
GGGCATTCAATACGTTGGTTTGAAAATATGCCTGTTATTAGTTGGCTACTGCTAAAAGGAAAATGTAGTCAGTGTCATCA
CGCCATTAGTTATCGCTATCCGCTTGTGGAAATCATCACCGCTATTTTGTCTGTGCTGGTGGTAATGAAATTTGGTGTTA
CTTGGCAAGCGCTGGCAGGATTGGTACTCACATGGACATTAGTGGCTTTAACAGGCATTGATTTTGATACCCAGTTGTTG
CCTGACCGATTTACATTGCCGTTAGCGGGACTGGGCTTATTTGTCAATGCCTTTGGCTTATTTGTTAGCCCCACAGCGGC
TATTTTTGGCTATGTGTTTGGGTTTTTATGCCTGTGGATTGTCTACCAACTGTTTTTGCTGATTACGGGCAAGCACGGGA
TGGGGCATGGCGATTTTAAATTATTAGCGGCTTTGGGGGCTTGGCTAGGGCCTTTGATGCTACCCTTAGTTGTGCTTTTA
TCGGCGTTTGTCGGCTCGGTTGTGGGTGTGATATTGATGAAGCGCTCAGGTGAAAGCAAACCTTTTGCTTTTGGACCTTA
TATCGCGATTGCCGGCATGATAGCACTTTTGTATGGGCAATCAATAATGTCGTGGTATCTAGGTAAAATGTCATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(24-131)

Type IV leader peptidase family (Peptidase_A24)

(141-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

65.169

91.753

0.598
  pilD Acinetobacter nosocomialis M2

65.169

91.753

0.598
  pilD Vibrio campbellii strain DS40M4

48.399

96.564

0.467
  pilD Vibrio cholerae strain A1552

48.175

94.158

0.454
  pilD Neisseria gonorrhoeae MS11

44.815

92.784

0.416

Multiple sequence alignment