Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACN08T_RS03885 Genome accession   NZ_CP183248
Coordinates   795932..797155 (-) Length   407 a.a.
NCBI ID   WP_305811052.1    Uniprot ID   -
Organism   Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 790932..802155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN08T_RS03860 (ACN08T_03860) mutT 792916..793320 (-) 405 WP_419205225.1 8-oxo-dGTP diphosphatase MutT -
  ACN08T_RS03865 (ACN08T_03865) yacG 793325..793546 (-) 222 WP_008987916.1 DNA gyrase inhibitor YacG -
  ACN08T_RS03870 (ACN08T_03870) zapD 793554..794300 (-) 747 WP_042117295.1 cell division protein ZapD -
  ACN08T_RS03875 (ACN08T_03875) coaE 794365..794970 (-) 606 WP_419205226.1 dephospho-CoA kinase -
  ACN08T_RS03880 (ACN08T_03880) pilD 794974..795843 (-) 870 WP_419205227.1 prepilin peptidase Machinery gene
  ACN08T_RS03885 (ACN08T_03885) pilC 795932..797155 (-) 1224 WP_305811052.1 type II secretion system F family protein Machinery gene
  ACN08T_RS03890 (ACN08T_03890) pilB 797200..798885 (-) 1686 WP_053988072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACN08T_RS03895 (ACN08T_03895) pilA 798887..799330 (-) 444 WP_419205228.1 pilin Machinery gene
  ACN08T_RS03900 (ACN08T_03900) nadC 799678..800565 (-) 888 WP_419206120.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACN08T_RS03905 (ACN08T_03905) ampD 800816..801361 (+) 546 WP_419205229.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45186.27 Da        Isoelectric Point: 9.4675

>NTDB_id=1104812 ACN08T_RS03885 WP_305811052.1 795932..797155(-) (pilC) [Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a]
MSTAATKIRYYNWRGTNQAGRKVSGTTLGFQEQEVRQQLLEQKIIIKKIKKTSPSILAKMRDQMKGEDITAVTRQLATMI
ESGVPVVQALQLMASSYNKAEMRATLLQITTQVESGASLSSAMRSSSPLFDKFYCDLVATGEQTGHLGQVFARIAVYREK
NEAMRKKVIKAMIYPSMVMLTAVLVTVLMLVFVIPQFAQIFSSFGAELPFFTQIVMHASDFLIAYGTYMAIGIASIVFLY
RYFYKKSDEFRYKSNKFVLKLPIFGDVLLKATIARFARTLATTFMAGIPLLSGIQSAGRTCGNLYIERAIEEVYESTAGG
MPLYLALRQSGVFPELMLQMVMIGEESGALDDMLNKMAQIYEADVDNTVDNLGQILEPFIIIILGGLIGGLLVAMYMPIF
TLMSVIG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1104812 ACN08T_RS03885 WP_305811052.1 795932..797155(-) (pilC) [Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a]
ATGAGTACAGCTGCCACTAAAATTCGCTATTACAACTGGCGTGGAACCAACCAAGCAGGGCGTAAAGTTTCAGGCACTAC
ACTAGGCTTTCAAGAACAAGAAGTTCGCCAACAGCTGCTTGAACAAAAGATCATTATTAAGAAAATAAAGAAAACCTCGC
CTTCAATTTTGGCAAAAATGCGCGACCAAATGAAAGGGGAAGATATAACAGCAGTCACCCGCCAGCTTGCTACCATGATT
GAGTCCGGTGTTCCTGTTGTTCAAGCGCTGCAACTAATGGCGAGCAGTTATAACAAAGCAGAAATGCGCGCCACTTTATT
GCAAATTACAACTCAAGTAGAATCAGGCGCATCCCTTTCCAGTGCCATGCGCTCTAGCTCACCGCTGTTTGATAAGTTCT
ACTGTGATTTAGTCGCAACAGGTGAGCAAACCGGTCACCTCGGACAAGTCTTTGCCCGTATTGCGGTTTACCGTGAAAAA
AATGAAGCAATGCGTAAAAAAGTTATCAAAGCCATGATTTACCCATCCATGGTTATGCTAACGGCTGTGCTGGTCACTGT
TCTAATGCTGGTTTTTGTTATCCCGCAATTTGCGCAGATATTTTCAAGCTTTGGTGCTGAATTGCCTTTCTTTACCCAAA
TCGTCATGCATGCATCAGACTTTCTTATTGCCTATGGCACCTATATGGCAATAGGTATTGCATCAATTGTTTTTCTCTAC
CGTTATTTTTATAAAAAATCGGATGAGTTTCGCTATAAATCCAATAAGTTTGTATTAAAACTGCCTATATTTGGTGATGT
ATTACTCAAAGCCACCATTGCCCGTTTTGCCCGCACTCTAGCCACCACTTTTATGGCGGGTATTCCGCTGCTATCAGGTA
TCCAATCAGCAGGAAGAACCTGTGGTAATTTATACATAGAAAGAGCCATTGAAGAAGTTTATGAAAGTACTGCTGGCGGT
ATGCCTTTGTATTTAGCCCTACGTCAATCGGGCGTTTTTCCAGAGCTGATGCTGCAAATGGTGATGATCGGTGAAGAATC
TGGTGCGCTTGATGATATGCTCAATAAAATGGCGCAAATCTATGAAGCAGATGTCGATAATACCGTTGATAACCTAGGGC
AAATTTTAGAGCCTTTCATCATCATTATTCTGGGTGGCTTGATCGGTGGCTTACTGGTAGCGATGTATATGCCAATCTTC
ACCTTAATGAGCGTTATCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

55.172

99.754

0.55
  pilC Vibrio campbellii strain DS40M4

53.071

100

0.531
  pilC Acinetobacter baumannii D1279779

41.562

97.543

0.405
  pilG Neisseria gonorrhoeae MS11

40.695

99.017

0.403
  pilG Neisseria meningitidis 44/76-A

40.695

99.017

0.403
  pilC Pseudomonas stutzeri DSM 10701

39.901

99.754

0.398
  pilC Acinetobacter baylyi ADP1

40.05

97.543

0.391
  pilC Legionella pneumophila strain ERS1305867

38.889

97.297

0.378

Multiple sequence alignment