Detailed information NTG1104811

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACN08T_RS03880
• Genome accession: NZ_CP183248
• Coordinates: 794974..795843 (-)
• Length: 289 a.a.
• NCBI ID: WP_419205227.1
• Uniprot ID: -
• Organism: Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 789974..800843

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN08T_RS03855 (ACN08T_03855)	secA	790094..792826 (+)	2733	WP_419205224.1	preprotein translocase subunit SecA	-
ACN08T_RS03860 (ACN08T_03860)	mutT	792916..793320 (-)	405	WP_419205225.1	8-oxo-dGTP diphosphatase MutT	-
ACN08T_RS03865 (ACN08T_03865)	yacG	793325..793546 (-)	222	WP_008987916.1	DNA gyrase inhibitor YacG	-
ACN08T_RS03870 (ACN08T_03870)	zapD	793554..794300 (-)	747	WP_042117295.1	cell division protein ZapD	-
ACN08T_RS03875 (ACN08T_03875)	coaE	794365..794970 (-)	606	WP_419205226.1	dephospho-CoA kinase	-
ACN08T_RS03880 (ACN08T_03880)	pilD	794974..795843 (-)	870	WP_419205227.1	prepilin peptidase	Machinery gene
ACN08T_RS03885 (ACN08T_03885)	pilC	795932..797155 (-)	1224	WP_305811052.1	type II secretion system F family protein	Machinery gene
ACN08T_RS03890 (ACN08T_03890)	pilB	797200..798885 (-)	1686	WP_053988072.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACN08T_RS03895 (ACN08T_03895)	pilA	798887..799330 (-)	444	WP_419205228.1	pilin	Machinery gene
ACN08T_RS03900 (ACN08T_03900)	nadC	799678..800565 (-)	888	WP_419206120.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32342.58 Da
• Isoelectric Point: 5.6737

>NTDB_id=1104811 ACN08T_RS03880 WP_419205227.1 794974..795843(-) (pilD) [Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a]
MAVLDYYPWLYPLFAVIFGLLVGSFLNVVIYRLPIMMERQWRKECQECFPEINAEQDDSVFNLSVPRSRCPHCNHHISAL
ENIPVISWLVLGGKCKECKAPISKRYPAIELLTSAMSLTVSLMLPPSWWSLAVIFFTFALIALTFIDIDKMLLPDQITLP
LMWAGILLSVAGISPISLTDSVIGAMAGYLSLWSVFWVFKLLTKKDGMGYGDFKLLAALGAWLGWQLLPFVVLLSSLVGA
LCGLVLLKMQDADNQTPFSFGPYLAIAGWIAMLWGTPIIDWYLTSYLGM

Nucleotide

• Length: 870 bp

>NTDB_id=1104811 ACN08T_RS03880 WP_419205227.1 794974..795843(-) (pilD) [Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a]
ATGGCAGTACTTGATTATTACCCTTGGCTATACCCTCTTTTTGCCGTTATTTTTGGTTTGCTTGTCGGTAGCTTTTTAAA
TGTGGTGATCTATCGCCTGCCTATCATGATGGAGCGTCAATGGCGTAAGGAATGCCAAGAGTGTTTTCCTGAAATCAACG
CAGAGCAAGACGACAGCGTATTTAATTTAAGTGTGCCACGCTCACGCTGCCCGCACTGTAATCACCACATTAGCGCATTG
GAAAATATTCCTGTGATCAGTTGGCTAGTTCTCGGCGGTAAATGCAAAGAATGCAAAGCACCTATCAGTAAGCGCTACCC
TGCCATTGAGTTACTGACTTCTGCTATGAGCTTAACCGTATCATTGATGTTGCCACCATCATGGTGGTCACTGGCAGTGA
TCTTTTTTACCTTCGCGTTAATTGCACTAACTTTTATCGATATCGATAAAATGCTACTACCTGATCAAATCACCTTGCCA
TTAATGTGGGCGGGTATCTTATTGTCGGTAGCTGGTATTAGCCCTATATCGCTAACCGATTCAGTGATTGGTGCGATGGC
TGGTTATTTATCGCTGTGGAGTGTGTTCTGGGTATTTAAACTGCTGACTAAAAAAGATGGCATGGGCTACGGTGACTTCA
AACTACTTGCCGCATTAGGTGCATGGCTTGGCTGGCAATTACTGCCTTTCGTTGTGTTATTATCATCTCTTGTTGGTGCG
CTATGTGGTCTTGTATTACTTAAGATGCAAGACGCAGATAACCAAACGCCATTCTCATTTGGTCCTTACCTTGCGATTGC
AGGATGGATCGCAATGCTTTGGGGCACACCAATCATCGACTGGTATTTAACATCATACTTAGGAATGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-122)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	62.284	100	0.623
pilD	Vibrio cholerae strain A1552	60.417	99.654	0.602
pilD	Acinetobacter nosocomialis M2	53.933	92.388	0.498
pilD	Acinetobacter baumannii D1279779	53.933	92.388	0.498
pilD	Neisseria gonorrhoeae MS11	46.786	96.886	0.453