Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACN08T_RS03895 | Genome accession | NZ_CP183248 |
| Coordinates | 798887..799330 (-) | Length | 147 a.a. |
| NCBI ID | WP_419205228.1 | Uniprot ID | - |
| Organism | Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 793887..804330
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACN08T_RS03875 (ACN08T_03875) | coaE | 794365..794970 (-) | 606 | WP_419205226.1 | dephospho-CoA kinase | - |
| ACN08T_RS03880 (ACN08T_03880) | pilD | 794974..795843 (-) | 870 | WP_419205227.1 | prepilin peptidase | Machinery gene |
| ACN08T_RS03885 (ACN08T_03885) | pilC | 795932..797155 (-) | 1224 | WP_305811052.1 | type II secretion system F family protein | Machinery gene |
| ACN08T_RS03890 (ACN08T_03890) | pilB | 797200..798885 (-) | 1686 | WP_053988072.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACN08T_RS03895 (ACN08T_03895) | pilA | 798887..799330 (-) | 444 | WP_419205228.1 | pilin | Machinery gene |
| ACN08T_RS03900 (ACN08T_03900) | nadC | 799678..800565 (-) | 888 | WP_419206120.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACN08T_RS03905 (ACN08T_03905) | ampD | 800816..801361 (+) | 546 | WP_419205229.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ACN08T_RS03910 (ACN08T_03910) | pdhR | 801683..802456 (+) | 774 | WP_008987925.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 15363.42 Da Isoelectric Point: 4.4419
>NTDB_id=1104814 ACN08T_RS03895 WP_419205228.1 798887..799330(-) (pilA) [Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a]
MKKQQGFTLIELMIVVAIIGILSAFAVPAYQDYTKKATLSEFPKVASSTKLAIEVCAHETAADGDSFKTKCINGQEIATL
SLNDIDITTVAGTASGAVNLVATAGADKGPIKSGETYVMVGTYSTSGVTWDSYCTTDGTATQDTYCP
MKKQQGFTLIELMIVVAIIGILSAFAVPAYQDYTKKATLSEFPKVASSTKLAIEVCAHETAADGDSFKTKCINGQEIATL
SLNDIDITTVAGTASGAVNLVATAGADKGPIKSGETYVMVGTYSTSGVTWDSYCTTDGTATQDTYCP
Nucleotide
Download Length: 444 bp
>NTDB_id=1104814 ACN08T_RS03895 WP_419205228.1 798887..799330(-) (pilA) [Photobacterium leiognathi subsp. mandapamensis strain Sc9.10a]
ATGAAAAAACAACAGGGTTTTACTCTTATTGAATTGATGATCGTGGTAGCGATCATTGGTATTTTGTCTGCGTTTGCAGT
ACCTGCTTATCAAGATTATACAAAGAAAGCGACCTTATCTGAATTTCCTAAAGTCGCATCTTCAACAAAATTAGCAATTG
AAGTTTGTGCTCATGAAACAGCCGCAGATGGAGATAGTTTCAAAACTAAATGTATTAATGGTCAAGAGATAGCAACTTTA
AGTCTCAATGATATCGATATTACAACGGTCGCAGGCACTGCATCTGGAGCTGTTAACCTTGTTGCAACAGCAGGTGCAGA
TAAAGGACCAATTAAGTCAGGTGAAACCTATGTTATGGTTGGTACATATTCAACATCAGGTGTAACTTGGGATTCGTACT
GTACGACTGATGGTACAGCTACACAAGATACATACTGTCCATAA
ATGAAAAAACAACAGGGTTTTACTCTTATTGAATTGATGATCGTGGTAGCGATCATTGGTATTTTGTCTGCGTTTGCAGT
ACCTGCTTATCAAGATTATACAAAGAAAGCGACCTTATCTGAATTTCCTAAAGTCGCATCTTCAACAAAATTAGCAATTG
AAGTTTGTGCTCATGAAACAGCCGCAGATGGAGATAGTTTCAAAACTAAATGTATTAATGGTCAAGAGATAGCAACTTTA
AGTCTCAATGATATCGATATTACAACGGTCGCAGGCACTGCATCTGGAGCTGTTAACCTTGTTGCAACAGCAGGTGCAGA
TAAAGGACCAATTAAGTCAGGTGAAACCTATGTTATGGTTGGTACATATTCAACATCAGGTGTAACTTGGGATTCGTACT
GTACGACTGATGGTACAGCTACACAAGATACATACTGTCCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio campbellii strain DS40M4 |
61.745 |
100 |
0.626 |
| pilA2 | Legionella pneumophila str. Paris |
42.308 |
88.435 |
0.374 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
41.538 |
88.435 |
0.367 |
| comP | Acinetobacter baylyi ADP1 |
37.589 |
95.918 |
0.361 |
| pilA | Haemophilus influenzae 86-028NP |
34.868 |
100 |
0.361 |