Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACNS8M_RS01405 Genome accession   NZ_CP183239
Coordinates   309638..310864 (-) Length   408 a.a.
NCBI ID   WP_168417584.1    Uniprot ID   -
Organism   Acinetobacter sp. A2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 304638..315864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNS8M_RS01380 (ACNS8M_01360) - 305941..306264 (+) 324 WP_168417589.1 pyrimidine/purine nucleoside phosphorylase -
  ACNS8M_RS01385 (ACNS8M_01365) rlmB 306443..307192 (+) 750 WP_168541325.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNS8M_RS01390 (ACNS8M_01370) - 307234..308163 (+) 930 WP_168417587.1 DMT family transporter -
  ACNS8M_RS01395 (ACNS8M_01375) coaE 308160..308768 (-) 609 WP_168417586.1 dephospho-CoA kinase -
  ACNS8M_RS01400 (ACNS8M_01380) pilD 308778..309638 (-) 861 WP_168541327.1 prepilin peptidase Machinery gene
  ACNS8M_RS01405 (ACNS8M_01385) pilC 309638..310864 (-) 1227 WP_168417584.1 type II secretion system F family protein Machinery gene
  ACNS8M_RS01410 (ACNS8M_01390) pilB 310895..312607 (-) 1713 WP_168417583.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACNS8M_RS01415 (ACNS8M_01395) tpiA 312885..313676 (+) 792 WP_168417582.1 triose-phosphate isomerase -
  ACNS8M_RS01420 (ACNS8M_01400) secG 313690..314019 (+) 330 WP_168417581.1 preprotein translocase subunit SecG -
  ACNS8M_RS01445 (ACNS8M_01425) rimP 315177..315701 (+) 525 WP_168460415.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44950.50 Da        Isoelectric Point: 9.9487

>NTDB_id=1104730 ACNS8M_RS01405 WP_168417584.1 309638..310864(-) (pilC) [Acinetobacter sp. A2]
MAVKKAQMMPTFVYEGIDRKGAKLKGEIPARNMALAKVTLRKQGITIKTIRQKKKNILDGLMKKRVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFEELFSSFGADLPAFTKMVVNMSQWMQKYWFLLIIVIGVIIA
GFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRVTNKFPAMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMSVLGILVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1104730 ACNS8M_RS01405 WP_168417584.1 309638..310864(-) (pilC) [Acinetobacter sp. A2]
ATGGCTGTCAAAAAAGCACAGATGATGCCCACCTTCGTTTATGAGGGGATTGACCGCAAAGGGGCTAAGCTTAAAGGGGA
AATTCCAGCGCGTAATATGGCTTTGGCAAAAGTCACATTGCGTAAACAAGGAATTACCATCAAGACCATTCGCCAAAAGA
AAAAGAATATTCTTGATGGCTTAATGAAAAAACGGGTGTCAACGCTCGACATCACGATTTTCACGCGTCAGCTTGCCACG
ATGATGAAAGCAGGTGTGCCTTTGGTACAAAGCTTTGAAATTGTTGCCGAAGGTCTAGAAAACCCTGCCATGCGTGAAGT
GGTACTGGGCATTAAAGGCGAGGTTGAAGGCGGGAATACCTTTGCTGGTGCATTGCGTAAATATCCTCAATATTTTGACA
ACTTATTCTGCTCTTTAGTGGAATCTGGTGAACAATCAGGTGCGCTGGAAACTATGCTAGATCGTGTTGCGATCTATAAA
GAAAAGAGCGAATTGTTAAAACAAAAAATCAAAAAAGCCATGAAATACCCTGCAACGGTCATTGTAGTGGCTGTGATTGT
GACCATTATTTTGATGGTAAAAGTTGTTCCTGTATTTGAAGAATTGTTTAGCTCTTTTGGTGCAGACTTACCTGCCTTCA
CTAAAATGGTGGTAAACATGTCACAATGGATGCAGAAATATTGGTTCCTGCTGATTATTGTAATTGGTGTCATTATTGCA
GGTTTCCTCGAAGCTAAAAAACGGAGTAAAAAATTCCGTGATTTCTTGGACAAAGCTGCACTCAAAGCACCTATTTTTGG
TGATTTGGTCTATAAAGCCATTATTGCACGTTATAGCCGTACCTTAGCCACGACCTTCGCTGCGGGTGTACCATTAATTG
ATGCTTTGGAATCAACTGCAGGTGCAACCAACAACGTGGTCTATGAAGAAGCGGTCATGAAAATTCGTGAAGATGTCGCC
ACAGGTCAGCAACTACAATTCGCCATGCGCGTTACCAATAAATTCCCAGCGATGGCCGTGCAAATGGTGGCGATTGGTGA
AGAGTCTGGTGCACTCGATGCCATGTTAGATAAAGTCGCAACCCACTATGAAAACGAAGTAGATAACGCAGTAGATGGTT
TAACCTCGATGATGGAACCTCTGATTATGTCTGTGTTAGGTATTTTAGTCGGTGGTTTGGTTGTGGCTATGTACCTTCCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

87.745

100

0.877
  pilC Acinetobacter baylyi ADP1

83.578

100

0.836
  pilC Pseudomonas stutzeri DSM 10701

59.459

99.755

0.593
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria gonorrhoeae MS11

47.236

97.549

0.461
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

43.627

100

0.436
  pilC Vibrio campbellii strain DS40M4

41.832

99.02

0.414
  pilC Thermus thermophilus HB27

36.79

99.265

0.365

Multiple sequence alignment