Detailed information NTG1103910

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ACNOHD_RS16965
• Genome accession: NZ_CP183060
• Coordinates: 3585934..3587151 (-)
• Length: 405 a.a.
• NCBI ID: WP_418643305.1
• Uniprot ID: -
• Organism: Stutzerimonas kunmingensis strain L4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3584128..3594393	3585934..3587151	within	0

Gene organization within MGE regions

Location: 3584128..3594393

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNOHD_RS16950 (ACNOHD_16950)	yacG	3584128..3584325 (-)	198	WP_312441528.1	DNA gyrase inhibitor YacG	-
ACNOHD_RS16955 (ACNOHD_16955)	coaE	3584322..3584930 (-)	609	WP_312441531.1	dephospho-CoA kinase	-
ACNOHD_RS16960 (ACNOHD_16960)	pilD	3585062..3585931 (-)	870	WP_278401439.1	prepilin peptidase	Machinery gene
ACNOHD_RS16965 (ACNOHD_16965)	pilC	3585934..3587151 (-)	1218	WP_418643305.1	type II secretion system F family protein	Machinery gene
ACNOHD_RS16970 (ACNOHD_16970)	pilB	3587153..3588856 (-)	1704	WP_418643306.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACNOHD_RS16975 (ACNOHD_16975)	-	3589167..3589640 (+)	474	WP_418643307.1	pilin	-
ACNOHD_RS16980 (ACNOHD_16980)	-	3590576..3591139 (+)	564	WP_200650223.1	REP-associated tyrosine transposase	-
ACNOHD_RS16985 (ACNOHD_16985)	-	3591369..3591809 (+)	441	WP_125862181.1	YtoQ family protein	-
ACNOHD_RS16990 (ACNOHD_16990)	cysN	3592103..3594001 (-)	1899	WP_418643308.1	sulfate adenylyltransferase subunit CysN	-
ACNOHD_RS16995 (ACNOHD_16995)	-	3594052..3594393 (-)	342	WP_003302815.1	four helix bundle protein	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 43857.56 Da
• Isoelectric Point: 9.9374

>NTDB_id=1103910 ACNOHD_RS16965 WP_418643305.1 3585934..3587151(-) (pilC) [Stutzerimonas kunmingensis strain L4]
MAQKAVKTSVFTWEGTNRQGAKIKGELSGVSPALVKAQLRKQGVNPQKVRKKSVSLFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFAAALRKKPQYFDDLYCNLVDSGEQSGSLETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAIIVSAILLIKVVPQFQDVFANFGAELPAFTLMVIGLSEALQAWWHVVLLALFGAAYAFK
TAHGKSERFRNGFDRFLLKIPVVGDILYKSAVARFARTLATTFAAGVPLVDALDSVAGATGNVVFRNATMKVKADVSSGM
QLNFSMRTTGTFPSMAIQMTAIGEESGSLDEMLAKVATFYEDEVDNMVDGLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide

• Length: 1218 bp

>NTDB_id=1103910 ACNOHD_RS16965 WP_418643305.1 3585934..3587151(-) (pilC) [Stutzerimonas kunmingensis strain L4]
ATGGCGCAGAAAGCGGTAAAAACCAGTGTTTTCACCTGGGAAGGCACCAACAGGCAAGGCGCAAAGATAAAGGGCGAGCT
GAGCGGCGTCAGCCCTGCGTTGGTAAAGGCGCAACTGCGCAAGCAGGGTGTCAACCCACAGAAGGTCCGCAAAAAGTCGG
TGTCGCTGTTCAGTGCCGGCAAGAAGATCAAGCCGATGGACATCGCCCTGTTCACACGGCAGATGGCAACCATGATGAAA
GCCGGCGTGCCGCTGCTGCAGTCGTTCGACATCATCGGCGAGGGTTTCGATAACCCGAACATGCGCAAGCTTGTAGACGA
CCTGAAACAGGAAGTCGCGGCGGGTAACAGCTTTGCTGCGGCGTTGCGCAAGAAGCCGCAGTACTTCGATGATCTGTATT
GCAACCTGGTCGACTCGGGCGAACAGTCTGGCTCGCTGGAGACGCTGCTGGATCGCGTCGCGACCTATAAGGAAAAGACC
GAAGCACTCAAAGCCAAGATCAAAAAGGCGATGAATTACCCCATCGCGGTTGTCTTGGTGGCCATCATAGTGTCGGCGAT
TCTGCTGATCAAAGTGGTGCCTCAGTTCCAAGATGTGTTTGCCAACTTCGGGGCCGAACTGCCTGCCTTTACACTAATGG
TCATTGGCCTGTCGGAGGCATTGCAAGCCTGGTGGCATGTGGTATTGCTCGCTCTGTTCGGGGCGGCTTATGCTTTCAAG
ACTGCCCACGGCAAATCGGAACGTTTCCGCAATGGGTTTGACCGTTTTTTGCTCAAGATCCCAGTGGTCGGCGATATTCT
CTATAAGTCTGCGGTGGCGCGCTTTGCGCGCACGCTGGCCACTACCTTTGCCGCCGGTGTGCCGTTGGTCGATGCATTGG
ACTCGGTGGCCGGGGCGACCGGCAATGTGGTGTTCCGCAATGCGACCATGAAGGTCAAGGCTGATGTATCCAGTGGTATG
CAGCTTAACTTTTCGATGCGCACTACCGGCACCTTTCCCAGTATGGCGATCCAGATGACGGCGATTGGCGAGGAGTCCGG
CTCTCTTGATGAGATGCTTGCGAAGGTGGCGACGTTCTATGAAGACGAAGTCGACAATATGGTCGACGGGCTGACTGCTC
TGATGGAGCCAATGATCATGGCGGTGCTTGGTGTGCTGGTCGGCGGTTTGATCATTGCCATGTATCTCCCGATTTTCCAG
CTGGGTGCCGTCGTCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (275-397)

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	91.605	100	0.916
pilC	Acinetobacter baylyi ADP1	59.36	100	0.595
pilC	Acinetobacter baumannii D1279779	59.259	100	0.593
pilC	Legionella pneumophila strain ERS1305867	53.535	97.778	0.523
pilG	Neisseria gonorrhoeae MS11	45.025	99.259	0.447
pilG	Neisseria meningitidis 44/76-A	45.025	99.259	0.447
pilC	Vibrio cholerae strain A1552	42.929	97.778	0.42
pilC	Vibrio campbellii strain DS40M4	41.162	97.778	0.402
pilC	Thermus thermophilus HB27	36.842	98.519	0.363