Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACNQFN_RS17825 Genome accession   NZ_CP183038
Coordinates   3681824..3683053 (+) Length   409 a.a.
NCBI ID   WP_068637466.1    Uniprot ID   -
Organism   Thauera butanivorans strain TB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3676824..3688053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNQFN_RS17805 (ACNQFN_17805) - 3676919..3677695 (-) 777 WP_418647142.1 EI24 domain-containing protein -
  ACNQFN_RS17810 (ACNQFN_17810) ffh 3677718..3679088 (-) 1371 WP_068637472.1 signal recognition particle protein -
  ACNQFN_RS17815 (ACNQFN_17815) - 3679140..3679973 (+) 834 WP_068637470.1 cytochrome C assembly family protein -
  ACNQFN_RS17820 (ACNQFN_17820) pilB 3680085..3681803 (+) 1719 WP_068637468.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACNQFN_RS17825 (ACNQFN_17825) pilC 3681824..3683053 (+) 1230 WP_068637466.1 type II secretion system F family protein Machinery gene
  ACNQFN_RS17830 (ACNQFN_17830) pilD 3683061..3683912 (+) 852 WP_068637464.1 prepilin peptidase Machinery gene
  ACNQFN_RS17835 (ACNQFN_17835) - 3684068..3684337 (+) 270 WP_068637462.1 FmdB family zinc ribbon protein -
  ACNQFN_RS17840 (ACNQFN_17840) - 3684398..3685021 (+) 624 WP_068637461.1 DUF502 domain-containing protein -
  ACNQFN_RS17845 (ACNQFN_17845) aspS 3685084..3686883 (+) 1800 WP_068637459.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44394.35 Da        Isoelectric Point: 9.6322

>NTDB_id=1103742 ACNQFN_RS17825 WP_068637466.1 3681824..3683053(+) (pilC) [Thauera butanivorans strain TB]
MATASRAAHQTEPKEHLYNWEGKDKSGKIVRGEIRSNGDALVRAMLRRQGILVTKVKQQKMSRGGRISDRDIALFTRQLA
TMMKSGVPLLQAFDIGIKGSGNPALARLLNDVRTDVETGSSLSQAFSRHPVHFDRLFCNLVSAGEQAGILDSLLDRIATY
KEKILAIKGKIKSALFYPIAVMVVAALVISVMMLFVIPEFKSVFAGFGADLPAPTMIVIAMSDFFVEFWYIVLGIPILAI
AVVGWLYKRSPAMQIAVDRMVLKLPVVGPIIRKATVARWTRTLSTMFAAGVPLVEALDSVGGASGNHIYLMATREIQNEV
STGTSLTVAMQSSDVFPTMVVQMVSIGEESGQLDAMLGKVADFFEQEVDEAVAGLSQLLEPIIMVFLGTVIGGLVVAMYL
PIFKLGSIV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1103742 ACNQFN_RS17825 WP_068637466.1 3681824..3683053(+) (pilC) [Thauera butanivorans strain TB]
ATGGCAACCGCAAGCCGGGCAGCGCATCAGACGGAGCCGAAAGAGCACCTCTACAACTGGGAAGGCAAGGACAAGAGCGG
CAAGATCGTCCGCGGCGAAATCCGCAGCAACGGCGATGCCCTCGTTCGCGCCATGCTGCGCCGGCAAGGCATCCTGGTCA
CCAAGGTCAAGCAGCAGAAGATGTCGCGGGGCGGCAGGATTTCCGACCGGGACATCGCGCTGTTCACCCGCCAGTTGGCG
ACGATGATGAAATCCGGCGTGCCGCTGCTGCAGGCTTTCGACATCGGCATCAAGGGTTCGGGCAACCCGGCGCTGGCACG
CCTGCTCAACGATGTCCGCACCGACGTCGAAACCGGCTCCAGCCTGTCGCAGGCCTTCTCCAGGCACCCGGTGCATTTCG
ACAGGCTGTTCTGCAACCTCGTCAGCGCGGGCGAACAGGCCGGCATCCTCGACAGCCTGCTCGACCGCATCGCCACCTAC
AAGGAAAAGATCCTCGCCATCAAGGGCAAGATCAAGTCCGCGCTGTTCTACCCGATCGCCGTCATGGTGGTGGCCGCGCT
GGTCATCTCGGTGATGATGCTGTTCGTCATCCCCGAATTCAAGAGCGTCTTTGCCGGCTTCGGCGCCGACCTTCCGGCGC
CGACGATGATCGTGATCGCGATGTCCGACTTCTTCGTCGAGTTCTGGTACATCGTGCTCGGCATACCGATCCTGGCCATC
GCCGTCGTCGGTTGGCTGTACAAGCGCTCGCCGGCCATGCAGATCGCGGTCGACCGCATGGTGCTCAAGCTGCCGGTCGT
CGGTCCGATCATCCGCAAGGCCACCGTGGCGCGCTGGACGCGGACCCTGTCGACCATGTTCGCCGCTGGCGTGCCGCTGG
TGGAAGCGCTCGACTCGGTGGGCGGCGCCTCGGGCAACCACATCTACCTGATGGCAACGCGCGAGATCCAGAACGAAGTC
AGCACCGGCACCAGCCTCACCGTGGCGATGCAGAGCTCGGACGTGTTCCCCACCATGGTCGTGCAGATGGTGTCGATCGG
CGAGGAGTCCGGCCAGCTCGACGCCATGCTGGGCAAGGTCGCCGACTTCTTCGAGCAGGAGGTCGACGAGGCCGTCGCAG
GCCTTTCGCAACTGCTCGAACCGATCATCATGGTCTTCCTCGGCACCGTGATCGGCGGCCTGGTGGTCGCGATGTACCTG
CCCATCTTCAAGCTCGGCTCCATCGTCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.217

99.267

0.518
  pilG Neisseria gonorrhoeae MS11

50.877

97.555

0.496
  pilC Pseudomonas stutzeri DSM 10701

50.372

98.533

0.496
  pilG Neisseria meningitidis 44/76-A

50.63

97.066

0.491
  pilC Acinetobacter baylyi ADP1

47

97.8

0.46
  pilC Acinetobacter baumannii D1279779

46.599

97.066

0.452
  pilC Vibrio cholerae strain A1552

40.887

99.267

0.406
  pilC Vibrio campbellii strain DS40M4

40.547

98.289

0.399
  pilC Thermus thermophilus HB27

38.404

98.044

0.377

Multiple sequence alignment