Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACNH6B_RS01040 Genome accession   NZ_CP182944
Coordinates   221800..223065 (-) Length   421 a.a.
NCBI ID   WP_418357948.1    Uniprot ID   -
Organism   Shewanella basaltis strain KCTC 22121     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 216800..228065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNH6B_RS01010 (ACNH6B_01010) - 217565..218600 (+) 1036 WP_418357800.1 IS630 family transposase -
  ACNH6B_RS01015 (ACNH6B_01015) mutT 218791..219189 (-) 399 WP_418357944.1 8-oxo-dGTP diphosphatase MutT -
  ACNH6B_RS01020 (ACNH6B_01020) yacG 219212..219421 (-) 210 WP_248970754.1 DNA gyrase inhibitor YacG -
  ACNH6B_RS01025 (ACNH6B_01025) zapD 219500..220234 (-) 735 WP_418357945.1 cell division protein ZapD -
  ACNH6B_RS01030 (ACNH6B_01030) coaE 220227..220856 (-) 630 WP_418357946.1 dephospho-CoA kinase -
  ACNH6B_RS01035 (ACNH6B_01035) pilD 220853..221779 (-) 927 WP_418357947.1 prepilin peptidase Machinery gene
  ACNH6B_RS01040 (ACNH6B_01040) pilC 221800..223065 (-) 1266 WP_418357948.1 type II secretion system F family protein Machinery gene
  ACNH6B_RS01045 (ACNH6B_01045) pilB 223220..224926 (-) 1707 WP_418357949.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACNH6B_RS01050 (ACNH6B_01050) pilE 225018..225461 (-) 444 WP_418357950.1 pilin Machinery gene
  ACNH6B_RS01055 (ACNH6B_01055) nadC 226295..227173 (-) 879 WP_248970760.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACNH6B_RS01060 (ACNH6B_01060) ampD 227370..227942 (+) 573 WP_418357951.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46086.24 Da        Isoelectric Point: 10.1582

>NTDB_id=1103381 ACNH6B_RS01040 WP_418357948.1 221800..223065(-) (pilC) [Shewanella basaltis strain KCTC 22121]
MATAAAKRKPKTKKQAQKHQPKVFTFEWKGVNRDGARTSGELRGTSIAEIRSILKAQGVTPKGVRKKSAPLFKSEKKITA
MDIAMITRQIATMLSAGVPLVTTIELLGRGHEKAKVRELLGTILSDVQSGIPLSDALRPHRQYFDDLYVDLVAAGEHSGS
LDAVFDRVATYREKAEQLKSKIKKAMFYPAAVVVVAMAVTVLLLLFVVPQFEDIFKGFGAELPAFTQLIIGVSRWLQSSW
YYFAIAIVAAIWLFKKTHRTSQNFRDKIDQLVLKIPAIGDILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNYVY
RSALLKVRQEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGGLDEMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
VVGGLIVGMYLPIFEMGNVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=1103381 ACNH6B_RS01040 WP_418357948.1 221800..223065(-) (pilC) [Shewanella basaltis strain KCTC 22121]
ATGGCCACTGCAGCAGCAAAAAGAAAACCTAAAACGAAAAAACAAGCCCAAAAGCATCAACCCAAAGTATTTACCTTTGA
GTGGAAAGGAGTGAATCGTGATGGTGCACGCACTTCAGGTGAACTTCGGGGCACCAGCATTGCTGAAATCCGCAGTATAT
TAAAAGCCCAGGGCGTAACCCCAAAAGGTGTGCGTAAAAAATCGGCGCCGCTATTTAAGTCAGAGAAAAAGATCACCGCA
ATGGACATTGCCATGATCACTCGCCAAATAGCCACCATGCTTTCTGCTGGTGTACCATTAGTCACTACCATTGAATTACT
CGGTCGCGGCCACGAAAAAGCTAAAGTTAGAGAGCTACTCGGAACAATATTGTCGGATGTGCAATCCGGTATTCCACTGT
CCGATGCCTTAAGGCCCCACAGACAATACTTTGATGATTTATACGTTGACCTAGTGGCCGCAGGTGAGCATTCTGGTTCG
CTTGATGCGGTATTTGATCGTGTTGCAACCTATCGCGAAAAAGCTGAGCAATTAAAATCTAAAATCAAAAAAGCCATGTT
TTATCCAGCCGCTGTGGTAGTTGTTGCAATGGCGGTGACTGTACTTTTACTTCTATTTGTTGTGCCGCAGTTCGAGGATA
TTTTTAAAGGCTTTGGCGCAGAACTGCCTGCCTTTACTCAACTAATTATTGGGGTATCAAGGTGGCTTCAATCTTCTTGG
TATTACTTTGCGATAGCAATCGTAGCTGCTATTTGGTTATTTAAAAAAACCCACAGAACATCACAAAACTTTCGTGACAA
AATTGATCAACTGGTGTTAAAAATCCCTGCTATTGGCGATATTCTTCATAAAGCCGCCATGGCTCGTTTTGCACGAACAT
TAGCCACCACGTTTGCCGCTGGTGTGCCCTTAATTGATGGTTTAGAGTCCGCTGCAGGCGCCTCCGGCAACTATGTATAT
CGCTCAGCACTGCTTAAAGTTCGCCAAGAGGTGATGTCAGGCATGCAGATGAACGTGGCCATGCGCACCACAGGCTTATT
TCCAGACATGCTAATCCAAATGGTGATGATTGGTGAAGAGTCGGGCGGCCTAGACGAAATGCTTAATAAAGTAGCCAACA
TTTATGAAATGCAGGTAGACGACGCCGTAGATGGCTTATCTAGCCTGATTGAACCGATTATGATGGTGGTGATTGGCACG
GTTGTGGGTGGACTAATTGTTGGTATGTATCTACCTATCTTCGAAATGGGTAACGTTGTTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.949

93.824

0.525
  pilC Acinetobacter baylyi ADP1

51.385

94.299

0.485
  pilC Acinetobacter baumannii D1279779

50.754

94.537

0.48
  pilC Legionella pneumophila strain ERS1305867

49.257

95.962

0.473
  pilC Vibrio cholerae strain A1552

48.492

94.537

0.458
  pilC Vibrio campbellii strain DS40M4

44.527

95.487

0.425
  pilG Neisseria meningitidis 44/76-A

42.04

95.487

0.401
  pilG Neisseria gonorrhoeae MS11

42.04

95.487

0.401

Multiple sequence alignment