Detailed information NTG1103380

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACNH6B_RS01035
• Genome accession: NZ_CP182944
• Coordinates: 220853..221779 (-)
• Length: 308 a.a.
• NCBI ID: WP_418357947.1
• Uniprot ID: -
• Organism: Shewanella basaltis strain KCTC 22121
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 215853..226779

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNH6B_RS01010 (ACNH6B_01010)	-	217565..218600 (+)	1036	WP_418357800.1	IS630 family transposase	-
ACNH6B_RS01015 (ACNH6B_01015)	mutT	218791..219189 (-)	399	WP_418357944.1	8-oxo-dGTP diphosphatase MutT	-
ACNH6B_RS01020 (ACNH6B_01020)	yacG	219212..219421 (-)	210	WP_248970754.1	DNA gyrase inhibitor YacG	-
ACNH6B_RS01025 (ACNH6B_01025)	zapD	219500..220234 (-)	735	WP_418357945.1	cell division protein ZapD	-
ACNH6B_RS01030 (ACNH6B_01030)	coaE	220227..220856 (-)	630	WP_418357946.1	dephospho-CoA kinase	-
ACNH6B_RS01035 (ACNH6B_01035)	pilD	220853..221779 (-)	927	WP_418357947.1	prepilin peptidase	Machinery gene
ACNH6B_RS01040 (ACNH6B_01040)	pilC	221800..223065 (-)	1266	WP_418357948.1	type II secretion system F family protein	Machinery gene
ACNH6B_RS01045 (ACNH6B_01045)	pilB	223220..224926 (-)	1707	WP_418357949.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACNH6B_RS01050 (ACNH6B_01050)	pilE	225018..225461 (-)	444	WP_418357950.1	pilin	Machinery gene

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34540.06 Da
• Isoelectric Point: 8.0234

>NTDB_id=1103380 ACNH6B_RS01035 WP_418357947.1 220853..221779(-) (pilD) [Shewanella basaltis strain KCTC 22121]
MTDFISNFITTMHQYPWVFVVISFIFAATIGSFINVVIHRLPVMMKREWQSECNFYLNEYHPDIVKQVGSERLHKPIDEF
PTKYNLVVPGSACPKCKSNIKPWHNLPIVGWLSLQGKCANCKTPISARYPIIELLTALLISTLAFYFGPSWQFVYASILT
FVLVALTGIDLDEMLLPDQLTLPILWLGLVINLKGIYTSPEDAIIGAAAGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAV
FGAWLGWQMLPLIILLSSLVGAVVGIMMIITKKLNKGNPIPFGPYIAAAGWIALVWGQDIINWYLSTL

Nucleotide

• Length: 927 bp

>NTDB_id=1103380 ACNH6B_RS01035 WP_418357947.1 220853..221779(-) (pilD) [Shewanella basaltis strain KCTC 22121]
ATGACTGATTTTATCTCAAATTTTATTACAACAATGCACCAGTACCCTTGGGTGTTTGTGGTGATTAGCTTTATTTTTGC
AGCCACCATTGGCAGTTTTATTAACGTTGTGATCCATCGTTTACCGGTAATGATGAAACGTGAATGGCAAAGCGAATGCA
ACTTTTATTTAAACGAATATCATCCCGATATTGTTAAGCAGGTCGGTAGTGAGCGTTTACATAAACCCATTGACGAGTTT
CCTACAAAGTACAACTTAGTTGTGCCGGGTTCGGCTTGCCCAAAGTGTAAAAGCAATATCAAACCCTGGCACAATTTACC
TATAGTGGGTTGGCTATCCTTACAAGGTAAATGCGCTAATTGTAAAACGCCCATTTCAGCTCGTTATCCTATTATTGAGC
TGTTAACGGCCTTGCTCATCTCCACACTGGCGTTCTATTTTGGCCCTAGCTGGCAGTTTGTCTATGCCAGCATATTAACC
TTTGTTTTAGTGGCACTCACCGGCATCGATTTAGATGAAATGCTGTTGCCCGATCAGCTTACCTTACCAATATTATGGCT
AGGGCTAGTGATTAATCTTAAAGGGATTTACACCAGTCCTGAAGATGCCATTATTGGCGCTGCTGCAGGCTATTTAAGCT
TATGGTCTGTGTTTTGGTTATTTAAACTCGTTACTGGCAAAGAGGGCATGGGTTACGGCGACTTTAAATTGCTCGCGGTG
TTTGGCGCATGGTTAGGTTGGCAAATGCTCCCACTCATTATATTACTGTCGTCGCTAGTAGGCGCGGTTGTAGGCATTAT
GATGATCATCACTAAGAAGCTAAACAAAGGTAACCCGATTCCGTTTGGCCCTTATATTGCGGCAGCGGGTTGGATTGCTC
TAGTCTGGGGGCAAGACATCATTAATTGGTATTTAAGCACCCTATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (158-266)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-146)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	51.495	97.727	0.503
pilD	Vibrio cholerae strain A1552	51.186	95.779	0.49
pilD	Acinetobacter baumannii D1279779	49.02	99.351	0.487
pilD	Acinetobacter nosocomialis M2	48.366	99.351	0.481
pilD	Neisseria gonorrhoeae MS11	43.643	94.481	0.412