Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H9T68_RS04820 Genome accession   NZ_CP181346
Coordinates   1047451..1048668 (-) Length   405 a.a.
NCBI ID   WP_280187383.1    Uniprot ID   -
Organism   Delftia sp. PS-11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1042451..1053668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9T68_RS04790 (H9T68_004785) - 1043383..1044339 (+) 957 WP_280187389.1 ATP-binding protein -
  H9T68_RS04795 (H9T68_004790) mutT 1044405..1044851 (+) 447 WP_280187528.1 8-oxo-dGTP diphosphatase MutT -
  H9T68_RS04800 (H9T68_004795) - 1044870..1045079 (-) 210 WP_280187388.1 DNA gyrase inhibitor YacG -
  H9T68_RS04805 (H9T68_004800) zapD 1045085..1045840 (-) 756 WP_280187387.1 cell division protein ZapD -
  H9T68_RS04810 (H9T68_004805) coaE 1045929..1046564 (-) 636 WP_280187385.1 dephospho-CoA kinase -
  H9T68_RS04815 (H9T68_004810) pilD 1046576..1047451 (-) 876 WP_280187384.1 prepilin peptidase Machinery gene
  H9T68_RS04820 (H9T68_004815) pilC 1047451..1048668 (-) 1218 WP_280187383.1 type II secretion system F family protein Machinery gene
  H9T68_RS04825 (H9T68_004820) pilB 1048719..1050461 (-) 1743 WP_280187382.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H9T68_RS04835 (H9T68_004830) - 1050812..1051741 (-) 930 WP_280187526.1 polyprenyl synthetase family protein -
  H9T68_RS04840 (H9T68_004835) rplU 1051970..1052281 (+) 312 WP_280187380.1 50S ribosomal protein L21 -
  H9T68_RS04845 (H9T68_004840) rpmA 1052297..1052554 (+) 258 WP_012207283.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44477.25 Da        Isoelectric Point: 9.2131

>NTDB_id=1099805 H9T68_RS04820 WP_280187383.1 1047451..1048668(-) (pilC) [Delftia sp. PS-11]
MATAASKDIKESVFEWEGKDRNGKIVRGETRAGGINQVQAMLRRQGVLPSKIKKRRTRGGKRIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTRLLADIRSDVETGSSLNSAFRKHPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT
EAIKAKIKSALMYPISVIIVAFVVVTIIMIFVIPAFKEVFTSFGADLPAPTLLVMGISDVFVQWWWLIFGVIGGGLYFFF
QAWKRNERMQQFMDRTILKLPVFGILIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNYVFSSATDKIQQEVSTGT
SLTVAMTNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEEEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1099805 H9T68_RS04820 WP_280187383.1 1047451..1048668(-) (pilC) [Delftia sp. PS-11]
ATGGCCACAGCCGCGTCAAAGGACATCAAGGAATCTGTCTTCGAGTGGGAAGGCAAGGACCGCAATGGAAAGATCGTGCG
CGGCGAGACCCGGGCCGGCGGCATCAACCAAGTCCAGGCCATGCTGCGCCGCCAGGGCGTGCTCCCCAGCAAGATCAAGA
AGCGCCGCACACGCGGCGGCAAACGGATCAAGCCCAAGGACATTGCACTGTTCACCCGCCAGATGGCGACGATGATGAAA
GCTGGCGTGCCCCTGCTGCAGGCTTTCGACATCGTGGGCCGCGGCAACACCAACCCCAGTGTGACACGTCTGCTGGCCGA
CATACGCTCGGACGTGGAAACCGGCAGTTCGCTCAATTCGGCCTTTCGCAAGCATCCGATGTATTTCGACAGCCTGTACT
GCAATCTGGTCGAGGCAGGCGAAGCAGCGGGTATTCTGGAAGCGCTGCTCGACCGGCTGGCCACTTACATGGAAAAGACC
GAGGCGATCAAGGCCAAGATCAAATCGGCGCTGATGTATCCGATCTCGGTGATCATCGTTGCCTTCGTGGTCGTGACCAT
CATCATGATCTTCGTGATCCCGGCCTTCAAAGAGGTCTTCACCTCGTTTGGCGCCGATCTGCCCGCCCCCACGCTGCTCG
TCATGGGCATCAGCGATGTGTTCGTGCAATGGTGGTGGCTGATCTTCGGCGTGATCGGCGGTGGCCTGTATTTCTTTTTC
CAGGCCTGGAAACGCAATGAGCGCATGCAGCAGTTCATGGACCGGACCATTCTCAAGCTGCCGGTATTCGGCATTCTGAT
CGAGAAATCCTGCGTGGCGCGCTGGACACGCACGCTCTCGACCATGTTCGCTGCCGGGGTACCGCTGGTCGAGGCCCTGG
ACTCCGTGGGCGGGGCTTCGGGCAACTATGTGTTTTCCAGCGCGACCGACAAGATCCAGCAGGAGGTCTCCACCGGCACC
AGTCTGACGGTGGCCATGACCAATGCCAACGTCTTTCCTTCCATGGTGCTGCAGATGTGCGCCATTGGCGAGGAGTCAGG
CTCCATCGACCATATGCTGGGCAAGGCCGCGGACTTCTACGAAGAAGAAGTGGATGACATGGTCGCCGGCCTGTCCAGCC
TGATGGAGCCCATCATCATCGTGTTTCTGGGCACACTCATCGGCGGCATCGTGGTGTCGATGTACCTGCCGATCTTCAAG
CTGGGGCAGGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.693

99.753

0.556
  pilG Neisseria gonorrhoeae MS11

50.882

98.025

0.499
  pilG Neisseria meningitidis 44/76-A

50.63

98.025

0.496
  pilC Acinetobacter baylyi ADP1

49.14

100

0.494
  pilC Legionella pneumophila strain ERS1305867

50.253

97.778

0.491
  pilC Acinetobacter baumannii D1279779

48.111

98.025

0.472
  pilC Vibrio cholerae strain A1552

40.806

98.025

0.4
  pilC Vibrio campbellii strain DS40M4

38.539

98.025

0.378
  pilC Thermus thermophilus HB27

37.093

98.519

0.365

Multiple sequence alignment