Detailed information NTG1099804

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H9T68_RS04815
• Genome accession: NZ_CP181346
• Coordinates: 1046576..1047451 (-)
• Length: 291 a.a.
• NCBI ID: WP_280187384.1
• Uniprot ID: -
• Organism: Delftia sp. PS-11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1041576..1052451

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9T68_RS04785 (H9T68_004780)	argJ	1042077..1043309 (+)	1233	WP_280187390.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
H9T68_RS04790 (H9T68_004785)	-	1043383..1044339 (+)	957	WP_280187389.1	ATP-binding protein	-
H9T68_RS04795 (H9T68_004790)	mutT	1044405..1044851 (+)	447	WP_280187528.1	8-oxo-dGTP diphosphatase MutT	-
H9T68_RS04800 (H9T68_004795)	-	1044870..1045079 (-)	210	WP_280187388.1	DNA gyrase inhibitor YacG	-
H9T68_RS04805 (H9T68_004800)	zapD	1045085..1045840 (-)	756	WP_280187387.1	cell division protein ZapD	-
H9T68_RS04810 (H9T68_004805)	coaE	1045929..1046564 (-)	636	WP_280187385.1	dephospho-CoA kinase	-
H9T68_RS04815 (H9T68_004810)	pilD	1046576..1047451 (-)	876	WP_280187384.1	prepilin peptidase	Machinery gene
H9T68_RS04820 (H9T68_004815)	pilC	1047451..1048668 (-)	1218	WP_280187383.1	type II secretion system F family protein	Machinery gene
H9T68_RS04825 (H9T68_004820)	pilB	1048719..1050461 (-)	1743	WP_280187382.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H9T68_RS04835 (H9T68_004830)	-	1050812..1051741 (-)	930	WP_280187526.1	polyprenyl synthetase family protein	-
H9T68_RS04840 (H9T68_004835)	rplU	1051970..1052281 (+)	312	WP_280187380.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 31511.00 Da
• Isoelectric Point: 7.8941

>NTDB_id=1099804 H9T68_RS04815 WP_280187384.1 1046576..1047451(-) (pilD) [Delftia sp. PS-11]
MPTELWMQAALGGLLGLLVGSFLNVVIHRLPRMMEQQWQAEYAQWQQEQQAAPAQPDAQPPRLSLSQPRSRCPHCGHAIR
WYENIPVLSYLALRGRCAQCHAAIGLRYPAVELACAALFALCASRWGITPTGAAWCLFSAALLSLALIDWDTTLLPDDIT
LPLLWAGLLASALQWTSVPLADAVWGAAAGYLSLWLVYWGFKLATGKEGMGYGDFKLFAALGAWFGWQALVPIILVSSVI
GAVVGIALKINSRLREGGYVPFGPFLAGAGFAAMFFGPQRMLQSLLALAGL

Nucleotide

• Length: 876 bp

>NTDB_id=1099804 H9T68_RS04815 WP_280187384.1 1046576..1047451(-) (pilD) [Delftia sp. PS-11]
ATGCCCACGGAACTCTGGATGCAGGCTGCGCTGGGCGGCTTGCTGGGCCTGCTGGTCGGCAGCTTTCTCAACGTCGTGAT
ACACCGGCTGCCCCGCATGATGGAGCAGCAATGGCAGGCCGAGTACGCGCAATGGCAGCAGGAGCAGCAGGCAGCCCCGG
CGCAGCCGGATGCACAGCCTCCACGGCTGAGCCTGAGCCAGCCACGCTCGCGCTGTCCGCACTGCGGCCACGCCATACGC
TGGTACGAAAACATCCCGGTGCTCAGCTACCTGGCGCTGCGGGGCCGCTGCGCGCAATGCCATGCGGCCATCGGCCTGCG
CTACCCGGCGGTGGAGCTGGCATGCGCAGCACTGTTCGCCTTGTGCGCATCCCGCTGGGGCATCACTCCCACTGGCGCAG
CCTGGTGCCTGTTCAGCGCCGCGCTGCTGAGCCTGGCACTGATCGACTGGGACACCACATTGCTGCCAGACGACATCACG
CTGCCGCTGCTGTGGGCCGGCCTGCTGGCGTCAGCGCTGCAATGGACATCTGTCCCCCTGGCGGATGCCGTATGGGGAGC
AGCTGCCGGCTATCTGTCGCTATGGCTGGTCTACTGGGGCTTCAAGCTCGCCACGGGCAAGGAAGGCATGGGCTATGGGG
ATTTCAAGCTGTTCGCTGCGCTGGGCGCATGGTTTGGCTGGCAGGCGCTGGTGCCCATCATTCTGGTGTCCTCGGTGATC
GGCGCTGTCGTGGGCATCGCGCTCAAGATCAACAGCCGCCTGCGTGAAGGCGGTTATGTGCCTTTTGGTCCATTTCTGGC
AGGAGCAGGCTTTGCGGCCATGTTCTTTGGCCCGCAGCGCATGCTGCAGTCCCTGCTGGCACTGGCTGGCCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-125)

• Type IV leader peptidase family (Peptidase_A24) (137-246)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.542	95.189	0.481
pilD	Vibrio campbellii strain DS40M4	48	94.502	0.454
pilD	Acinetobacter baumannii D1279779	46.097	92.44	0.426
pilD	Acinetobacter nosocomialis M2	46.097	92.44	0.426
pilD	Neisseria gonorrhoeae MS11	47.692	89.347	0.426