Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACGHAD_RS03775 Genome accession   NZ_AP031500
Coordinates   892635..893894 (-) Length   419 a.a.
NCBI ID   WP_382413769.1    Uniprot ID   -
Organism   Gilvimarinus japonicus strain 12-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 887635..898894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHAD_RS03750 (R50076_07490) argJ 888709..889929 (+) 1221 WP_382413783.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACGHAD_RS03755 (R50076_07500) - 889933..890862 (+) 930 WP_382413781.1 Nudix family hydrolase -
  ACGHAD_RS03760 yacG 890916..891104 (-) 189 WP_339616425.1 DNA gyrase inhibitor YacG -
  ACGHAD_RS03765 (R50076_07510) coaE 891122..891742 (-) 621 WP_339616426.1 dephospho-CoA kinase -
  ACGHAD_RS03770 (R50076_07520) pilD 891755..892630 (-) 876 WP_382413774.1 prepilin peptidase Machinery gene
  ACGHAD_RS03775 (R50076_07530) pilC 892635..893894 (-) 1260 WP_382413769.1 type II secretion system F family protein Machinery gene
  ACGHAD_RS03780 (R50076_07540) pilB 893898..895607 (-) 1710 WP_382413766.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACGHAD_RS03785 (R50076_07550) pilA2 895929..896354 (+) 426 WP_382413764.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACGHAD_RS03790 (R50076_07560) - 896468..897178 (+) 711 WP_382413762.1 hypothetical protein -
  ACGHAD_RS03795 (R50076_07570) nadC 897311..898174 (-) 864 WP_382413760.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45658.65 Da        Isoelectric Point: 9.9823

>NTDB_id=109951 ACGHAD_RS03775 WP_382413769.1 892635..893894(-) (pilC) [Gilvimarinus japonicus strain 12-2]
MATVTAQQKTKSRKPTKAVTSSTFVYNATDKKGKTVKGEVTGTSPALIRAHLQKQGLNVKSVKKKPKPLFGSGGKKIKPA
DIAVFSRQMATMMKAGVPLVQSFDIVADGVENPSVRELVYKIREEVASGTGFAATLRKYPRHFDDLFCNLVDAGEQSGAL
ETMLDRIATYKEKTEALKAKIKKALTYPIAVIVVAIIVTAILLIKVVPQFAETFSSFGADLPAFTLFVLHLSELTQKYWL
YFLVGSVALGFAFKELRIRSTKFAYFIDRVSLKIPVIGDILYLSIMARFARTLSTTFAAGVPLIDALTSVAGATGNRIYT
DAVIDVREEVSTGIQLNAAIRNRGIFPSLLIQMASIGEESGALDEMLDKVATYYEEAVDNKVDSLSSLLEPMIMSILGVL
IGGLMIAMYLPIFQIGQVM

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=109951 ACGHAD_RS03775 WP_382413769.1 892635..893894(-) (pilC) [Gilvimarinus japonicus strain 12-2]
ATGGCGACCGTAACCGCGCAACAAAAAACAAAAAGCCGCAAGCCGACCAAAGCCGTCACTTCATCTACCTTTGTTTATAA
TGCCACTGACAAAAAAGGCAAGACAGTAAAGGGCGAGGTCACGGGCACTAGCCCAGCTCTCATTCGTGCACACCTGCAAA
AGCAAGGGTTAAACGTCAAATCGGTTAAAAAGAAACCCAAACCACTATTTGGCAGCGGCGGGAAGAAAATAAAGCCCGCT
GACATTGCTGTGTTCTCTCGACAAATGGCCACCATGATGAAAGCCGGTGTACCGTTGGTACAATCTTTCGACATTGTCGC
CGACGGTGTAGAGAACCCATCGGTTAGAGAGCTTGTCTACAAAATCAGAGAGGAGGTGGCATCAGGGACCGGCTTTGCTG
CAACACTCAGAAAATATCCTCGCCATTTTGACGATTTATTTTGCAATCTAGTGGATGCTGGCGAACAATCCGGCGCACTG
GAAACAATGCTGGATCGAATTGCCACCTATAAGGAGAAAACTGAGGCACTAAAGGCTAAAATTAAAAAAGCACTTACCTA
CCCTATCGCGGTTATCGTAGTGGCGATAATAGTAACTGCTATATTGCTGATTAAAGTTGTGCCGCAATTTGCCGAAACAT
TCAGTAGTTTTGGGGCGGACCTGCCAGCTTTTACGCTGTTTGTACTACATCTTTCCGAGTTAACACAAAAATATTGGCTT
TATTTTTTAGTTGGCTCCGTCGCTCTAGGATTCGCATTTAAAGAGCTACGAATAAGATCGACCAAGTTTGCTTATTTTAT
CGATCGAGTCTCTCTTAAAATACCTGTTATCGGCGACATTCTATACCTTTCGATCATGGCAAGGTTTGCACGCACATTGT
CCACAACGTTTGCTGCGGGCGTTCCACTTATTGACGCCTTGACCTCTGTTGCCGGTGCAACTGGCAATCGTATTTACACA
GATGCCGTAATCGATGTGCGCGAAGAAGTCTCCACCGGCATTCAGTTAAACGCGGCCATCAGGAATAGAGGTATATTCCC
TTCGTTACTGATACAAATGGCCTCAATTGGCGAAGAGTCGGGCGCGCTGGACGAAATGTTGGACAAAGTGGCTACATATT
ACGAGGAGGCCGTAGATAACAAAGTTGACAGTTTGTCTTCATTACTGGAGCCCATGATCATGTCCATTCTGGGCGTTTTG
ATTGGCGGTCTAATGATTGCTATGTATCTACCTATCTTTCAGATCGGGCAGGTTATGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

63.524

96.181

0.611
  pilC Acinetobacter baumannii D1279779

58.809

96.181

0.566
  pilC Acinetobacter baylyi ADP1

57.644

95.227

0.549
  pilC Legionella pneumophila strain ERS1305867

57.179

94.749

0.542
  pilG Neisseria meningitidis 44/76-A

44.25

95.465

0.422
  pilG Neisseria gonorrhoeae MS11

44.25

95.465

0.422
  pilC Vibrio cholerae strain A1552

39.409

96.897

0.382
  pilC Vibrio campbellii strain DS40M4

39.043

94.749

0.37

Multiple sequence alignment