Detailed information NTG0109950

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACGHAD_RS03770
• Genome accession: NZ_AP031500
• Coordinates: 891755..892630 (-)
• Length: 291 a.a.
• NCBI ID: WP_382413774.1
• Uniprot ID: -
• Organism: Gilvimarinus japonicus strain 12-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 886755..897630

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACGHAD_RS03750 (R50076_07490)	argJ	888709..889929 (+)	1221	WP_382413783.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
ACGHAD_RS03755 (R50076_07500)	-	889933..890862 (+)	930	WP_382413781.1	Nudix family hydrolase	-
ACGHAD_RS03760	yacG	890916..891104 (-)	189	WP_339616425.1	DNA gyrase inhibitor YacG	-
ACGHAD_RS03765 (R50076_07510)	coaE	891122..891742 (-)	621	WP_339616426.1	dephospho-CoA kinase	-
ACGHAD_RS03770 (R50076_07520)	pilD	891755..892630 (-)	876	WP_382413774.1	prepilin peptidase	Machinery gene
ACGHAD_RS03775 (R50076_07530)	pilC	892635..893894 (-)	1260	WP_382413769.1	type II secretion system F family protein	Machinery gene
ACGHAD_RS03780 (R50076_07540)	pilB	893898..895607 (-)	1710	WP_382413766.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACGHAD_RS03785 (R50076_07550)	pilA2	895929..896354 (+)	426	WP_382413764.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
ACGHAD_RS03790 (R50076_07560)	-	896468..897178 (+)	711	WP_382413762.1	hypothetical protein	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32041.34 Da
• Isoelectric Point: 7.0380

>NTDB_id=109950 ACGHAD_RS03770 WP_382413774.1 891755..892630(-) (pilD) [Gilvimarinus japonicus strain 12-2]
MSTTSFLVSEYHWFIYLTTVLFGLALGSFFNVVILRLPKIMEASWREQCCELLEQPDTEPNEKLGLAFPASHCPKCKAAI
KPWQNIPVISYLLLKGKCASCKVRISPRYPIVETVTALLSLAIVVKFGVTATSGALLIFTWALLVLTVIDIDTQLLPDDI
TLPLVWLGLIVNYFGLVTDLPSALWGAVFGYLSLWSVFWAFKLLTGKEGMGYGDFKLLAALGAWMGWQMLPLIIILSSLV
GAVIGIGMIIVMGRDKNIPIPFGPYLAIAGWIALLWGGEIVQQYLQLANIG

Nucleotide

• Length: 876 bp

>NTDB_id=109950 ACGHAD_RS03770 WP_382413774.1 891755..892630(-) (pilD) [Gilvimarinus japonicus strain 12-2]
ATGTCAACTACATCTTTTTTAGTCAGTGAATACCATTGGTTCATTTATTTAACCACTGTTTTATTTGGCCTCGCCCTCGG
CAGCTTTTTCAACGTAGTAATCCTACGCCTCCCCAAAATCATGGAGGCGTCGTGGCGCGAGCAGTGTTGTGAGCTTCTAG
AGCAGCCAGATACGGAGCCAAATGAAAAACTCGGCCTGGCCTTCCCGGCCTCCCACTGCCCCAAATGCAAAGCCGCCATT
AAGCCCTGGCAGAATATTCCGGTTATCAGCTATTTACTGCTTAAGGGCAAATGCGCGAGCTGCAAAGTGCGTATATCGCC
CCGCTACCCGATTGTTGAAACCGTAACAGCGCTTTTATCACTGGCGATTGTGGTTAAATTTGGGGTAACGGCTACCTCGG
GCGCGCTGCTGATTTTTACCTGGGCGCTGCTGGTATTAACGGTTATTGATATCGACACCCAGTTACTGCCCGATGACATT
ACCCTGCCCTTGGTGTGGCTGGGGTTGATTGTTAATTATTTTGGCCTAGTCACCGATTTACCCAGCGCTTTGTGGGGCGC
TGTATTTGGTTATTTATCACTCTGGTCGGTTTTTTGGGCATTTAAACTGCTGACCGGCAAAGAGGGCATGGGCTACGGCG
ACTTTAAGTTGTTAGCCGCGCTAGGTGCCTGGATGGGCTGGCAGATGCTACCGCTGATTATTATTTTATCGTCGCTGGTA
GGTGCGGTTATTGGCATCGGCATGATCATTGTTATGGGGCGCGATAAAAATATTCCGATTCCGTTTGGCCCCTACTTAGC
GATTGCAGGCTGGATTGCGTTGCTCTGGGGTGGCGAGATTGTCCAACAATACCTGCAATTGGCCAATATTGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-246)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	55.311	93.814	0.519
pilD	Acinetobacter nosocomialis M2	54.945	93.814	0.515
pilD	Vibrio cholerae strain A1552	51.986	95.189	0.495
pilD	Vibrio campbellii strain DS40M4	51.264	95.189	0.488
pilD	Neisseria gonorrhoeae MS11	50.198	86.942	0.436