Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACM660_RS01975 Genome accession   NZ_CP181170
Coordinates   413057..414286 (-) Length   409 a.a.
NCBI ID   WP_005200491.1    Uniprot ID   N9T4V3
Organism   Acinetobacter sp. SEK541     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 408057..419286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM660_RS01950 (ACM660_01950) - 409432..409758 (+) 327 WP_004802302.1 pyrimidine/purine nucleoside phosphorylase -
  ACM660_RS01955 (ACM660_01955) rlmB 409889..410638 (+) 750 WP_004802304.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACM660_RS01960 (ACM660_01960) - 410669..411580 (+) 912 WP_412781686.1 DMT family transporter -
  ACM660_RS01965 (ACM660_01965) coaE 411577..412182 (-) 606 WP_005200493.1 dephospho-CoA kinase -
  ACM660_RS01970 (ACM660_01970) pilD 412184..413044 (-) 861 WP_005200492.1 prepilin peptidase Machinery gene
  ACM660_RS01975 (ACM660_01975) pilC 413057..414286 (-) 1230 WP_005200491.1 type II secretion system F family protein Machinery gene
  ACM660_RS01980 (ACM660_01980) pilB 414311..416023 (-) 1713 WP_005200490.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACM660_RS01985 (ACM660_01985) tpiA 416395..417186 (+) 792 WP_005200489.1 triose-phosphate isomerase -
  ACM660_RS01990 (ACM660_01990) secG 417199..417528 (+) 330 WP_004802318.1 preprotein translocase subunit SecG -
  ACM660_RS02010 (ACM660_02010) rimP 418157..418681 (+) 525 WP_004802320.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45087.58 Da        Isoelectric Point: 9.8881

>NTDB_id=1099375 ACM660_RS01975 WP_005200491.1 413057..414286(-) (pilC) [Acinetobacter sp. SEK541]
MAAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGFMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPISVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSKWMQEYWFILIIVIGAIIA
AFMEAKKRSKKFRDLLDKMALRAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVVG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1099375 ACM660_RS01975 WP_005200491.1 413057..414286(-) (pilC) [Acinetobacter sp. SEK541]
ATGGCAGCTAAAAAAGCGCAAATGATGCCAACTTTTGCTTATGAAGGGGTCGACCGGAAAGGGGCAAAAATTAAAGGGGA
ATTACCAGCACGTAATATGGCTTTGGCTAAAGTTACATTACGTAAACAAGGGGTAACGATTAAAAATATTCGAGAAAAAC
GTAAAAATATTCTCGAAGGTTTTATGAAGAAAAAAGTTACAACTTTGGATATCACCATCTTTACCCGTCAATTAGCGACC
ATGATGAAAGCTGGGGTACCATTAGTTCAAGGCTTTGAAATTGTCGCGGAGGGATTAGAAAATCCATCTATGCGTGAGGT
GGTACTCGGAATCAAAGGCGAAGTCGAAGGGGGTAATACCTTTGCTGGCGCACTCAAAAAATACCCTCAATACTTTGATA
ATTTATTTTGTTCTTTGGTTGAGTCAGGTGAACAGTCAGGTGCGCTTGAAACCATGCTTGATCGCGTTGCGATCTATAAA
GAAAAGAGTGAGTTACTGAAACAAAAAATTAAAAAAGCCATGAAATATCCTATCTCGGTCATTGTGGTTGCTGTGATTGT
GACGATTATCTTGATGGTCAAAGTGGTACCAGTTTTCCAAGACTTATTTAGCTCTTTTGGTGCCGACCTTCCTGCCTTTA
CCAAAATGGTCGTGAATATGTCCAAGTGGATGCAAGAATACTGGTTTATTCTGATTATCGTGATTGGTGCGATCATTGCT
GCATTTATGGAGGCAAAAAAACGGAGTAAAAAATTCCGCGACTTATTGGACAAAATGGCACTCAGAGCACCTATCTTTGG
GGATTTGGTCTACAAAGCCATTATTGCCCGTTATAGCCGTACGCTTGCGACGACATTTGCCGCTGGGGTTCCGTTGATTG
ATGCACTTGAATCTACTGCGGGAGCCACCAATAACGTCGTTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTGGCA
ACAGGCCAACAATTACAATTTGCGATGCGTGTTTCTAACCGTTTTCCGTCGATGGCGATTCAAATGGTCGCAATTGGCGA
AGAGTCTGGTGCCCTAGACAGCATGTTGGACAAAGTCGCGACACATTATGAAAATGAAGTCGACAATGCGGTGGATGGCT
TAACTTCAATGATGGAGCCTTTAATCATGGCGATTCTTGGTGTACTAGTGGGTGGTCTGGTCATTGCCATGTACTTGCCA
ATCTTCCAAATGGGCTCAGTTGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9T4V3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

92.647

99.756

0.924
  pilC Acinetobacter baylyi ADP1

85.294

99.756

0.851
  pilC Pseudomonas stutzeri DSM 10701

60.345

99.267

0.599
  pilC Legionella pneumophila strain ERS1305867

53.086

99.022

0.526
  pilG Neisseria gonorrhoeae MS11

46.734

97.311

0.455
  pilG Neisseria meningitidis 44/76-A

46.734

97.311

0.455
  pilC Vibrio cholerae strain A1552

41.667

99.756

0.416
  pilC Vibrio campbellii strain DS40M4

40.732

100

0.408
  pilC Thermus thermophilus HB27

37.157

98.044

0.364

Multiple sequence alignment