Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACGHZ6_RS19185 Genome accession   NZ_AP031498
Coordinates   4428269..4429480 (+) Length   403 a.a.
NCBI ID   WP_390615637.1    Uniprot ID   -
Organism   Maricurvus nonylphenolicus strain KU41E     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4423269..4434480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHZ6_RS19165 (R50073_38250) nadC 4423864..4424721 (+) 858 WP_390615633.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACGHZ6_RS19170 (R50073_38260) - 4424767..4425513 (-) 747 WP_390615634.1 hypothetical protein -
  ACGHZ6_RS19175 (R50073_38270) - 4425593..4426183 (-) 591 WP_390615635.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACGHZ6_RS19180 (R50073_38280) pilB 4426517..4428250 (+) 1734 WP_390615636.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACGHZ6_RS19185 (R50073_38290) pilC 4428269..4429480 (+) 1212 WP_390615637.1 type II secretion system F family protein Machinery gene
  ACGHZ6_RS19190 (R50073_38300) pilD 4429504..4430409 (+) 906 WP_390615638.1 prepilin peptidase Machinery gene
  ACGHZ6_RS19195 (R50073_38310) coaE 4430530..4431129 (+) 600 WP_390615639.1 dephospho-CoA kinase -
  ACGHZ6_RS19200 (R50073_38320) yacG 4431131..4431346 (+) 216 WP_390615641.1 DNA gyrase inhibitor YacG -
  ACGHZ6_RS19205 (R50073_38330) gcvP 4431493..4434393 (-) 2901 WP_390615642.1 aminomethyl-transferring glycine dehydrogenase -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43187.74 Da        Isoelectric Point: 6.1057

>NTDB_id=109933 ACGHZ6_RS19185 WP_390615637.1 4428269..4429480(+) (pilC) [Maricurvus nonylphenolicus strain KU41E]
MATASADVFVYKGTDKKGNKVEGEISGASSALVKAQLVKKGINAKSVRKKAKPLFSNAKKITPQDVAIFTRQMATMMKAG
LPLVQSFEIVADGLENPSMKDLVLKIRDDVAAGGGFANALAKHPRYFDDLFCNLVDSGEQSGALETMLDRIATYKEKTEA
IKAKIKKALTYPIAVVVVALIVTGILLVKVVPQFAETFSSFGANLPAFTLFVLNISEVVQELWLIILVCIVAGVFVFREA
TLRSEAFAAAVDRAMLKLPIVGDIVYQSIVARFARTLSTTFAAGVPLIDALQSVAGATGNSVYEKATNKVREEVATGIQL
NASLKATGLFPTMLIQMTAIGEESGALDEMLDKVAEFYEDAVDNLVDSLTSLLEPMIMSVLGVLVGGLMIAMYLPIFQMG
QVV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=109933 ACGHZ6_RS19185 WP_390615637.1 4428269..4429480(+) (pilC) [Maricurvus nonylphenolicus strain KU41E]
ATGGCCACCGCATCTGCCGATGTCTTTGTATATAAAGGCACGGATAAAAAAGGGAACAAAGTTGAGGGAGAAATCTCCGG
AGCGAGTTCAGCGCTGGTTAAAGCCCAACTTGTTAAAAAAGGCATTAATGCTAAATCTGTTCGCAAAAAGGCCAAACCTT
TATTCAGTAACGCCAAGAAAATCACACCTCAGGACGTCGCCATCTTTACCCGTCAAATGGCCACCATGATGAAAGCAGGC
CTCCCTCTGGTACAAAGCTTTGAGATTGTTGCCGACGGCCTTGAAAACCCTTCCATGAAGGATCTTGTGCTAAAAATTCG
AGACGACGTTGCTGCTGGTGGTGGATTTGCTAACGCTCTAGCTAAGCATCCACGCTATTTTGACGATCTATTCTGCAATC
TTGTTGATTCAGGCGAGCAGTCCGGCGCCTTGGAAACCATGCTTGACCGCATTGCTACTTACAAAGAAAAAACAGAAGCA
ATCAAAGCTAAAATTAAAAAAGCTCTGACCTACCCCATAGCTGTAGTTGTGGTAGCACTTATTGTAACCGGGATTCTCTT
AGTAAAGGTTGTGCCTCAGTTTGCCGAAACATTCAGTAGCTTTGGTGCTAACCTGCCTGCTTTTACTTTGTTTGTACTAA
ATATATCCGAAGTAGTGCAAGAATTGTGGCTAATAATCCTTGTCTGTATTGTCGCAGGCGTATTCGTATTTAGAGAGGCA
ACGCTACGAAGTGAAGCCTTTGCTGCAGCAGTAGATCGAGCAATGCTTAAACTCCCCATTGTTGGAGACATTGTCTACCA
ATCCATCGTTGCCCGCTTTGCTCGCACCCTTTCAACCACTTTCGCCGCAGGCGTTCCCCTCATTGACGCCCTACAATCTG
TTGCTGGTGCAACAGGCAACAGTGTTTATGAAAAAGCTACCAATAAAGTACGGGAAGAAGTCGCAACAGGCATCCAACTG
AACGCCTCTTTAAAGGCAACAGGCCTTTTCCCCACCATGCTAATTCAAATGACAGCCATTGGTGAGGAATCAGGCGCGCT
GGATGAAATGCTCGATAAGGTTGCTGAGTTCTACGAGGATGCAGTAGACAATTTGGTAGACAGCTTAACCTCTCTACTAG
AACCAATGATTATGTCAGTCCTTGGCGTATTAGTAGGCGGCCTAATGATTGCAATGTACCTCCCCATTTTCCAAATGGGT
CAAGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

66.667

98.263

0.655
  pilC Acinetobacter baylyi ADP1

60.553

98.759

0.598
  pilC Acinetobacter baumannii D1279779

60.202

98.511

0.593
  pilC Legionella pneumophila strain ERS1305867

58.081

98.263

0.571
  pilG Neisseria meningitidis 44/76-A

43.939

98.263

0.432
  pilG Neisseria gonorrhoeae MS11

43.939

98.263

0.432
  pilC Vibrio cholerae strain A1552

39.599

99.007

0.392
  pilC Vibrio campbellii strain DS40M4

37.879

98.263

0.372
  pilC Thermus thermophilus HB27

37.343

99.007

0.37

Multiple sequence alignment