Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACGHZ6_RS19190 Genome accession   NZ_AP031498
Coordinates   4429504..4430409 (+) Length   301 a.a.
NCBI ID   WP_390615638.1    Uniprot ID   -
Organism   Maricurvus nonylphenolicus strain KU41E     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4424504..4435409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHZ6_RS19170 (R50073_38260) - 4424767..4425513 (-) 747 WP_390615634.1 hypothetical protein -
  ACGHZ6_RS19175 (R50073_38270) - 4425593..4426183 (-) 591 WP_390615635.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACGHZ6_RS19180 (R50073_38280) pilB 4426517..4428250 (+) 1734 WP_390615636.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACGHZ6_RS19185 (R50073_38290) pilC 4428269..4429480 (+) 1212 WP_390615637.1 type II secretion system F family protein Machinery gene
  ACGHZ6_RS19190 (R50073_38300) pilD 4429504..4430409 (+) 906 WP_390615638.1 prepilin peptidase Machinery gene
  ACGHZ6_RS19195 (R50073_38310) coaE 4430530..4431129 (+) 600 WP_390615639.1 dephospho-CoA kinase -
  ACGHZ6_RS19200 (R50073_38320) yacG 4431131..4431346 (+) 216 WP_390615641.1 DNA gyrase inhibitor YacG -
  ACGHZ6_RS19205 (R50073_38330) gcvP 4431493..4434393 (-) 2901 WP_390615642.1 aminomethyl-transferring glycine dehydrogenase -

Sequence

Protein


Download         Length: 301 a.a.        Molecular weight: 33081.17 Da        Isoelectric Point: 4.9087

>NTDB_id=109934 ACGHZ6_RS19190 WP_390615638.1 4429504..4430409(+) (pilD) [Maricurvus nonylphenolicus strain KU41E]
MNSALSAGPFFTEWPGFFIAYASIISLLVGSFLNVVIHRLPKMMEREWKHDCCELLEVEQQVDSDTPYNLITPNSHCPSC
GTPVKPWQNIPIISYLFLKGKCANCQTPISVRYPLVELATGLLSGYIAWQWGATPQACAAIVLTWVLIALTMIDIDTQLL
PDSLTLPLLWLGLILNSGAFFDGHGLFIPLDQALWGAIAGYMVLWSVFWLFKLLTGKEGMGFGDFKLLAALGAWMGWQAL
PLIIILSSLVGAVIGIAGIIIMGRDKNVPIPFGPYLAIAGWIALMWGDMITQSYLQFAGIQ

Nucleotide


Download         Length: 906 bp        

>NTDB_id=109934 ACGHZ6_RS19190 WP_390615638.1 4429504..4430409(+) (pilD) [Maricurvus nonylphenolicus strain KU41E]
ATGAATTCAGCACTCTCAGCCGGGCCATTTTTTACCGAATGGCCCGGATTTTTTATTGCCTACGCTTCAATTATCAGCTT
ACTGGTCGGCAGCTTCCTAAACGTCGTCATCCACCGCCTCCCCAAAATGATGGAGCGCGAGTGGAAGCACGACTGCTGCG
AGCTACTGGAGGTTGAACAACAAGTCGACTCCGACACCCCCTACAACCTAATCACCCCCAACTCCCACTGCCCCTCGTGC
GGGACACCAGTAAAACCCTGGCAGAATATCCCTATCATCAGCTATCTGTTTTTGAAGGGTAAATGCGCCAACTGCCAAAC
GCCGATTTCCGTACGCTATCCTCTGGTTGAGCTGGCGACTGGTCTGCTGAGCGGTTATATCGCATGGCAATGGGGAGCCA
CACCGCAGGCCTGTGCGGCCATTGTGCTGACCTGGGTGCTAATCGCACTAACCATGATCGATATCGATACCCAACTGCTG
CCCGATAGTCTGACACTGCCGCTGCTATGGCTGGGTTTGATCCTCAACAGCGGCGCCTTCTTTGATGGCCATGGTCTATT
TATACCGCTGGATCAAGCTCTGTGGGGAGCAATAGCCGGCTATATGGTGCTCTGGAGCGTGTTCTGGCTGTTTAAGCTGC
TGACCGGCAAGGAAGGGATGGGCTTTGGGGATTTCAAACTGCTGGCGGCTCTGGGGGCCTGGATGGGCTGGCAGGCACTG
CCTTTGATTATTATTTTGTCTTCCCTGGTCGGTGCTGTGATTGGTATTGCCGGTATTATCATTATGGGGCGCGATAAGAA
TGTGCCTATTCCCTTTGGCCCCTATCTGGCGATTGCAGGCTGGATTGCGCTGATGTGGGGCGATATGATTACGCAATCGT
ATTTGCAGTTTGCCGGGATTCAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(141-256)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(24-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

52.797

95.017

0.502
  pilD Acinetobacter nosocomialis M2

52.448

95.017

0.498
  pilD Vibrio campbellii strain DS40M4

51.228

94.684

0.485
  pilD Vibrio cholerae strain A1552

50.526

94.684

0.478
  pilD Neisseria gonorrhoeae MS11

52.19

91.03

0.475

Multiple sequence alignment