Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACGHM3_RS07205 Genome accession   NZ_AP031496
Coordinates   1658919..1660139 (-) Length   406 a.a.
NCBI ID   WP_345417450.1    Uniprot ID   A0AAV3TYV9
Organism   Halioxenophilus aromaticivorans strain KU68F     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1653919..1665139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHM3_RS07165 (R50071_14420) argJ 1654192..1655424 (+) 1233 WP_345417426.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACGHM3_RS07170 (R50071_14430) mutT 1655427..1655837 (+) 411 WP_345417429.1 8-oxo-dGTP diphosphatase MutT -
  ACGHM3_RS07175 (R50071_14440) - 1655911..1656171 (-) 261 WP_345417432.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  ACGHM3_RS07180 (R50071_14450) yacG 1656304..1656516 (-) 213 WP_345417435.1 DNA gyrase inhibitor YacG -
  ACGHM3_RS07185 (R50071_14460) - 1656577..1656861 (-) 285 WP_345417438.1 addiction module antidote protein -
  ACGHM3_RS07190 (R50071_14470) - 1656864..1657160 (-) 297 WP_345417441.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACGHM3_RS07195 (R50071_14480) coaE 1657216..1657818 (-) 603 WP_345417444.1 dephospho-CoA kinase -
  ACGHM3_RS07200 (R50071_14490) pilD 1658035..1658898 (-) 864 WP_345417447.1 A24 family peptidase Machinery gene
  ACGHM3_RS07205 (R50071_14500) pilC 1658919..1660139 (-) 1221 WP_345417450.1 type II secretion system F family protein Machinery gene
  ACGHM3_RS07210 (R50071_14510) pilB 1660145..1661869 (-) 1725 WP_345417453.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACGHM3_RS07215 (R50071_14520) pilE 1662343..1662798 (+) 456 WP_345417456.1 pilin Machinery gene
  ACGHM3_RS07220 - 1662963..1664870 (+) 1908 WP_345417459.1 hypothetical protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44111.85 Da        Isoelectric Point: 8.3785

>NTDB_id=109877 ACGHM3_RS07205 WP_345417450.1 1658919..1660139(-) (pilC) [Halioxenophilus aromaticivorans strain KU68F]
MAATAPSESVFTYKGVDKKGNKIQGETKGVSSAIVKAQLRKKGIVPAQVKKKPKPLFGGGGKKIAPQDIAIFTRQMATMM
KAGVPLVQSFDIVADGLENPSLRKLVLDIREDVSSGNSFASALAKQPKYFDDLFCNLVESGEQAGALETMLDRIATYKEK
TEQMKAKIKKAMTYPIAVVVVAVVVTGILLVKVVPQFAETFSSFGAELPAFTQFVMNLSETVQEMWLIILIGMVAFVFVF
LEAKKRSEAFAKICDRYILKVPIVGKIVYESIIARFARTLSTTFAAGVPLIDALDSVAGATGNKIFEETTHRVRDDVSTG
IQMNTSMRATGQFPSMLLQMTAIGEESGALDDMLDKVAQFYEESVDNLVDNLTTLLEPMIMAVLGILIGGLMVAMYMPIF
QIGQAV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=109877 ACGHM3_RS07205 WP_345417450.1 1658919..1660139(-) (pilC) [Halioxenophilus aromaticivorans strain KU68F]
ATGGCAGCTACAGCACCCTCTGAAAGCGTTTTTACCTACAAAGGCGTAGACAAAAAAGGCAACAAAATCCAAGGCGAAAC
CAAAGGCGTTAGCAGCGCCATTGTAAAAGCCCAACTGCGCAAAAAAGGTATTGTCCCGGCCCAGGTTAAAAAGAAGCCAA
AGCCATTATTTGGGGGTGGCGGCAAAAAAATCGCCCCCCAGGACATCGCCATATTCACCCGGCAAATGGCCACCATGATG
AAAGCCGGCGTACCCCTGGTGCAAAGCTTTGACATCGTAGCCGATGGCTTAGAGAACCCCTCCCTGCGCAAGCTGGTGCT
GGACATACGCGAAGATGTCTCCTCGGGTAACAGCTTTGCCTCAGCACTGGCCAAGCAACCAAAGTACTTTGACGATTTGT
TCTGTAACTTGGTGGAATCCGGCGAGCAGGCCGGTGCGTTGGAGACCATGCTGGATCGCATTGCCACCTACAAAGAAAAA
ACCGAACAAATGAAAGCCAAAATTAAAAAGGCCATGACTTATCCTATCGCCGTTGTGGTGGTGGCTGTTGTGGTTACCGG
TATTTTGTTGGTTAAAGTGGTACCCCAGTTTGCCGAAACCTTTTCCAGTTTTGGTGCCGAGCTGCCGGCCTTTACCCAGT
TTGTAATGAACTTATCCGAAACCGTGCAAGAAATGTGGTTAATAATTTTAATCGGCATGGTTGCCTTTGTGTTTGTATTC
TTAGAGGCTAAAAAGCGCTCAGAGGCTTTCGCCAAAATCTGCGACCGGTACATTTTAAAGGTGCCCATTGTGGGCAAAAT
TGTGTACGAATCCATTATTGCCCGCTTTGCGCGCACGCTCTCCACTACCTTTGCCGCCGGTGTACCGCTGATTGATGCAT
TGGATTCCGTGGCCGGTGCCACCGGGAACAAAATCTTCGAAGAAACCACCCACCGCGTACGCGATGACGTATCCACGGGT
ATACAAATGAACACCTCCATGCGCGCCACCGGCCAATTTCCTTCTATGCTGCTGCAGATGACGGCCATTGGTGAAGAGTC
CGGCGCGTTGGACGACATGCTGGATAAAGTCGCCCAGTTTTACGAGGAATCCGTTGATAACCTAGTGGACAACCTAACCA
CACTGTTAGAGCCCATGATTATGGCTGTACTGGGTATTTTAATTGGTGGTTTAATGGTGGCTATGTATATGCCCATCTTC
CAAATCGGCCAAGCTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

66.01

100

0.66
  pilC Acinetobacter baumannii D1279779

59.95

97.783

0.586
  pilC Acinetobacter baylyi ADP1

59.548

98.03

0.584
  pilC Legionella pneumophila strain ERS1305867

54.433

100

0.544
  pilG Neisseria meningitidis 44/76-A

44.417

99.261

0.441
  pilG Neisseria gonorrhoeae MS11

44.417

99.261

0.441
  pilC Vibrio cholerae strain A1552

41.327

96.552

0.399
  pilC Vibrio campbellii strain DS40M4

38.06

99.015

0.377

Multiple sequence alignment