Detailed information NTG0109876

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACGHM3_RS07200
• Genome accession: NZ_AP031496
• Coordinates: 1658035..1658898 (-)
• Length: 287 a.a.
• NCBI ID: WP_345417447.1
• Uniprot ID: A0AAV3TYB6
• Organism: Halioxenophilus aromaticivorans strain KU68F
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1653035..1663898

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACGHM3_RS07165 (R50071_14420)	argJ	1654192..1655424 (+)	1233	WP_345417426.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
ACGHM3_RS07170 (R50071_14430)	mutT	1655427..1655837 (+)	411	WP_345417429.1	8-oxo-dGTP diphosphatase MutT	-
ACGHM3_RS07175 (R50071_14440)	-	1655911..1656171 (-)	261	WP_345417432.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	-
ACGHM3_RS07180 (R50071_14450)	yacG	1656304..1656516 (-)	213	WP_345417435.1	DNA gyrase inhibitor YacG	-
ACGHM3_RS07185 (R50071_14460)	-	1656577..1656861 (-)	285	WP_345417438.1	addiction module antidote protein	-
ACGHM3_RS07190 (R50071_14470)	-	1656864..1657160 (-)	297	WP_345417441.1	type II toxin-antitoxin system RelE/ParE family toxin	-
ACGHM3_RS07195 (R50071_14480)	coaE	1657216..1657818 (-)	603	WP_345417444.1	dephospho-CoA kinase	-
ACGHM3_RS07200 (R50071_14490)	pilD	1658035..1658898 (-)	864	WP_345417447.1	A24 family peptidase	Machinery gene
ACGHM3_RS07205 (R50071_14500)	pilC	1658919..1660139 (-)	1221	WP_345417450.1	type II secretion system F family protein	Machinery gene
ACGHM3_RS07210 (R50071_14510)	pilB	1660145..1661869 (-)	1725	WP_345417453.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACGHM3_RS07215 (R50071_14520)	pilE	1662343..1662798 (+)	456	WP_345417456.1	pilin	Machinery gene

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 31634.55 Da
• Isoelectric Point: 7.6177

>NTDB_id=109876 ACGHM3_RS07200 WP_345417447.1 1658035..1658898(-) (pilD) [Halioxenophilus aromaticivorans strain KU68F]
MYDFLSYPPVLLPVVFILGLCIGSFLNVVIYRLPVMMQNQWRQECYDYLEQENPTPLKTPFNLAQPASTCPKCHTAIKPW
QNIPVLSYLLLRGKCGHCKTPIAARYPLVELATGALSAFVAWHIGYGPQLLALLFFTWCLISLTMIDIDHQLLPDSITLP
LLWAGLLINSQGLLTDLHSAVFGAAAGYLILWSVYWAFKLLTGKEGMGFGDFKLLAALGAWFGWQLLPLTIILSSLVGAV
LGVAMLALQGKEKSTPIPFGPYLAIAGWVAMLWGHQITGAYLQYSGS

Nucleotide

• Length: 864 bp

>NTDB_id=109876 ACGHM3_RS07200 WP_345417447.1 1658035..1658898(-) (pilD) [Halioxenophilus aromaticivorans strain KU68F]
ATGTACGATTTTCTTTCCTACCCACCGGTATTACTACCGGTGGTGTTTATTTTGGGCCTGTGTATTGGCAGCTTTTTAAA
TGTGGTGATTTACCGCCTGCCGGTGATGATGCAAAACCAGTGGCGGCAAGAGTGCTACGACTATCTAGAGCAAGAAAACC
CCACCCCACTAAAAACGCCGTTTAACTTGGCCCAGCCGGCCTCCACTTGCCCCAAGTGCCACACGGCCATTAAGCCTTGG
CAAAATATTCCGGTGCTCAGTTACCTGTTGTTACGCGGCAAGTGCGGCCACTGCAAAACCCCCATCGCTGCGCGCTACCC
GTTGGTGGAACTGGCCACCGGCGCACTGAGCGCCTTTGTTGCTTGGCATATAGGCTACGGCCCACAGTTGTTGGCACTGC
TGTTTTTTACCTGGTGTTTAATCAGCCTAACCATGATCGATATCGATCACCAGCTACTGCCAGATTCCATCACCCTACCT
CTTCTGTGGGCGGGCTTACTGATCAATAGCCAAGGATTATTGACCGATTTACACAGCGCTGTGTTCGGCGCCGCCGCCGG
TTATTTGATTTTATGGAGTGTGTATTGGGCGTTTAAATTACTCACCGGCAAAGAAGGCATGGGCTTTGGTGATTTTAAAT
TGCTGGCGGCGCTGGGCGCCTGGTTTGGCTGGCAGCTGCTGCCATTAACCATTATTTTATCTAGCCTGGTGGGGGCGGTG
TTGGGCGTGGCCATGCTGGCTTTGCAAGGCAAAGAAAAGTCTACCCCTATTCCCTTTGGGCCTTACCTGGCCATTGCCGG
CTGGGTGGCCATGCTTTGGGGCCACCAAATCACCGGGGCGTATTTGCAGTACTCTGGTTCTTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

• Type IV leader peptidase family (Peptidase_A24) (135-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.901	98.258	0.53
pilD	Vibrio campbellii strain DS40M4	53.71	98.606	0.53
pilD	Acinetobacter nosocomialis M2	54.478	93.38	0.509
pilD	Acinetobacter baumannii D1279779	54.478	93.38	0.509
pilD	Neisseria gonorrhoeae MS11	50.558	93.728	0.474