Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACM6AF_RS10275 | Genome accession | NZ_CP181120 |
| Coordinates | 2058441..2058869 (-) | Length | 142 a.a. |
| NCBI ID | WP_000934782.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain AG21-0606 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2022699..2066684 | 2058441..2058869 | within | 0 |
Gene organization within MGE regions
Location: 2022699..2066684
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACM6AF_RS10000 (ACM6AF_10005) | - | 2022699..2023214 (-) | 516 | WP_000163283.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| ACM6AF_RS10005 (ACM6AF_10010) | - | 2023345..2023506 (-) | 162 | WP_001005407.1 | SE1561 family protein | - |
| ACM6AF_RS10010 (ACM6AF_10015) | - | 2023853..2023933 (+) | 81 | WP_100250272.1 | hypothetical protein | - |
| ACM6AF_RS10015 (ACM6AF_10020) | - | 2024259..2024444 (-) | 186 | WP_001286805.1 | hypothetical protein | - |
| ACM6AF_RS10020 (ACM6AF_10025) | - | 2024446..2024556 (-) | 111 | WP_000139423.1 | hypothetical protein | - |
| ACM6AF_RS10025 (ACM6AF_10030) | - | 2024627..2024779 (-) | 153 | WP_001788502.1 | hypothetical protein | - |
| ACM6AF_RS10030 (ACM6AF_10035) | - | 2025022..2026467 (-) | 1446 | WP_001148115.1 | SH3 domain-containing protein | - |
| ACM6AF_RS10035 (ACM6AF_10040) | - | 2026448..2026885 (-) | 438 | WP_000354129.1 | phage holin | - |
| ACM6AF_RS10040 (ACM6AF_10045) | - | 2026941..2027336 (-) | 396 | WP_000398864.1 | hypothetical protein | - |
| ACM6AF_RS10045 (ACM6AF_10050) | - | 2027342..2028514 (-) | 1173 | WP_416152880.1 | BppU family phage baseplate upper protein | - |
| ACM6AF_RS10050 (ACM6AF_10055) | - | 2028527..2030401 (-) | 1875 | WP_000524041.1 | glucosaminidase domain-containing protein | - |
| ACM6AF_RS10055 (ACM6AF_10060) | - | 2030538..2030837 (-) | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| ACM6AF_RS10060 (ACM6AF_10065) | - | 2030878..2031051 (-) | 174 | WP_001800921.1 | XkdX family protein | - |
| ACM6AF_RS10065 (ACM6AF_10070) | - | 2031061..2031438 (-) | 378 | WP_000406973.1 | DUF2977 domain-containing protein | - |
| ACM6AF_RS10070 (ACM6AF_10075) | - | 2031438..2033261 (-) | 1824 | WP_000259622.1 | phage baseplate upper protein | - |
| ACM6AF_RS10075 (ACM6AF_10080) | - | 2033261..2035159 (-) | 1899 | WP_000323268.1 | hypothetical protein | - |
| ACM6AF_RS10080 (ACM6AF_10085) | - | 2035172..2037058 (-) | 1887 | WP_001122005.1 | SGNH/GDSL hydrolase family protein | - |
| ACM6AF_RS10085 (ACM6AF_10090) | - | 2037069..2038010 (-) | 942 | WP_000560185.1 | phage tail domain-containing protein | - |
| ACM6AF_RS10090 (ACM6AF_10095) | - | 2038025..2041168 (-) | 3144 | WP_000379439.1 | phage tail protein | - |
| ACM6AF_RS10095 (ACM6AF_10100) | - | 2041172..2041456 (-) | 285 | WP_000880588.1 | hypothetical protein | - |
| ACM6AF_RS10100 (ACM6AF_10105) | - | 2041501..2042007 (-) | 507 | WP_000134337.1 | tail assembly chaperone | - |
| ACM6AF_RS10105 (ACM6AF_10110) | - | 2042073..2042630 (-) | 558 | WP_000057582.1 | tail protein | - |
| ACM6AF_RS10110 (ACM6AF_10115) | - | 2042631..2043056 (-) | 426 | WP_000270188.1 | DUF3168 domain-containing protein | - |
| ACM6AF_RS10115 (ACM6AF_10120) | - | 2043069..2043476 (-) | 408 | WP_001151323.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| ACM6AF_RS10120 (ACM6AF_10125) | - | 2043463..2043798 (-) | 336 | WP_000483041.1 | phage head closure protein | - |
| ACM6AF_RS10125 (ACM6AF_10130) | - | 2043810..2044160 (-) | 351 | WP_000177351.1 | phage head-tail adapter protein | - |
| ACM6AF_RS10130 (ACM6AF_10135) | - | 2044166..2044309 (-) | 144 | WP_000002931.1 | hypothetical protein | - |
| ACM6AF_RS10135 (ACM6AF_10140) | - | 2044321..2045235 (-) | 915 | WP_000235168.1 | phage major capsid protein | - |
| ACM6AF_RS10140 (ACM6AF_10145) | - | 2045252..2045836 (-) | 585 | WP_001019221.1 | DUF4355 domain-containing protein | - |
| ACM6AF_RS10145 (ACM6AF_10150) | - | 2045939..2046145 (-) | 207 | WP_000346033.1 | hypothetical protein | - |
| ACM6AF_RS10150 (ACM6AF_10155) | - | 2046147..2047100 (-) | 954 | WP_000184131.1 | phage head morphogenesis protein | - |
| ACM6AF_RS10155 (ACM6AF_10160) | - | 2047069..2048493 (-) | 1425 | WP_000177426.1 | phage portal protein | - |
| ACM6AF_RS10160 (ACM6AF_10165) | - | 2048490..2049713 (-) | 1224 | WP_001037584.1 | PBSX family phage terminase large subunit | - |
| ACM6AF_RS10165 (ACM6AF_10170) | - | 2049706..2050200 (-) | 495 | WP_000594088.1 | terminase small subunit | - |
| ACM6AF_RS10170 (ACM6AF_10175) | - | 2050555..2050956 (-) | 402 | WP_000286968.1 | hypothetical protein | - |
| ACM6AF_RS10175 (ACM6AF_10180) | rinB | 2050957..2051130 (-) | 174 | WP_001826585.1 | transcriptional activator RinB | - |
| ACM6AF_RS10180 (ACM6AF_10185) | - | 2051130..2051516 (-) | 387 | WP_001623479.1 | hypothetical protein | - |
| ACM6AF_RS10185 (ACM6AF_10190) | - | 2051506..2051742 (-) | 237 | WP_000483477.1 | hypothetical protein | - |
| ACM6AF_RS10190 (ACM6AF_10195) | - | 2051767..2052003 (-) | 237 | WP_000195781.1 | DUF1381 domain-containing protein | - |
| ACM6AF_RS10195 (ACM6AF_10200) | - | 2052020..2052193 (-) | 174 | WP_001209219.1 | hypothetical protein | - |
| ACM6AF_RS10200 (ACM6AF_10205) | - | 2052230..2052763 (-) | 534 | WP_000181819.1 | dUTP diphosphatase | - |
| ACM6AF_RS10205 (ACM6AF_10210) | - | 2052756..2052998 (-) | 243 | WP_000700108.1 | hypothetical protein | - |
| ACM6AF_RS10210 (ACM6AF_10215) | - | 2052988..2053224 (-) | 237 | WP_001065103.1 | DUF1024 family protein | - |
| ACM6AF_RS10215 (ACM6AF_10220) | - | 2053217..2053549 (-) | 333 | WP_072467505.1 | acetyltransferase | - |
| ACM6AF_RS10220 (ACM6AF_10225) | - | 2053597..2053845 (-) | 249 | WP_001126836.1 | phi PVL orf 51-like protein | - |
| ACM6AF_RS10225 (ACM6AF_10230) | - | 2053846..2054205 (-) | 360 | WP_000029379.1 | SA1788 family PVL leukocidin-associated protein | - |
| ACM6AF_RS10230 (ACM6AF_10235) | - | 2054206..2054474 (-) | 269 | Protein_1977 | helix-turn-helix domain-containing protein | - |
| ACM6AF_RS10235 (ACM6AF_10240) | - | 2054475..2054660 (-) | 186 | WP_001187263.1 | DUF3113 family protein | - |
| ACM6AF_RS10240 (ACM6AF_10245) | - | 2054665..2055069 (-) | 405 | WP_000049812.1 | DUF1064 domain-containing protein | - |
| ACM6AF_RS10245 (ACM6AF_10250) | - | 2055080..2055301 (-) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| ACM6AF_RS10250 (ACM6AF_10255) | - | 2055314..2055475 (-) | 162 | WP_000237153.1 | hypothetical protein | - |
| ACM6AF_RS10255 (ACM6AF_10260) | - | 2055469..2056248 (-) | 780 | WP_000803056.1 | ATP-binding protein | - |
| ACM6AF_RS10260 (ACM6AF_10265) | - | 2056259..2057002 (-) | 744 | WP_000139436.1 | conserved phage C-terminal domain-containing protein | - |
| ACM6AF_RS10265 (ACM6AF_10270) | - | 2056995..2057759 (-) | 765 | WP_000240900.1 | AP2 domain-containing protein | - |
| ACM6AF_RS10270 (ACM6AF_10275) | - | 2057759..2058427 (-) | 669 | WP_001121805.1 | putative HNHc nuclease | - |
| ACM6AF_RS10275 (ACM6AF_10280) | ssbA | 2058441..2058869 (-) | 429 | WP_000934782.1 | single-stranded DNA-binding protein | Machinery gene |
| ACM6AF_RS10280 (ACM6AF_10285) | - | 2058869..2059492 (-) | 624 | WP_000139720.1 | DUF1071 domain-containing protein | - |
| ACM6AF_RS10285 (ACM6AF_10290) | - | 2059485..2059706 (-) | 222 | WP_001077280.1 | DUF2483 family protein | - |
| ACM6AF_RS10290 (ACM6AF_10295) | - | 2059716..2059976 (-) | 261 | WP_000291090.1 | DUF1108 family protein | - |
| ACM6AF_RS10295 (ACM6AF_10300) | - | 2060073..2060234 (-) | 162 | WP_000066011.1 | DUF1270 domain-containing protein | - |
| ACM6AF_RS10300 (ACM6AF_10305) | - | 2060227..2060448 (-) | 222 | WP_000594789.1 | hypothetical protein | - |
| ACM6AF_RS10305 (ACM6AF_10310) | - | 2060519..2060749 (+) | 231 | WP_000395455.1 | hypothetical protein | - |
| ACM6AF_RS10310 (ACM6AF_10315) | - | 2060925..2061665 (-) | 741 | WP_001148589.1 | phage antirepressor KilAC domain-containing protein | - |
| ACM6AF_RS10315 (ACM6AF_10320) | - | 2061667..2061852 (-) | 186 | WP_000933365.1 | helix-turn-helix domain-containing protein | - |
| ACM6AF_RS10320 (ACM6AF_10325) | - | 2062298..2062780 (+) | 483 | WP_000394410.1 | hypothetical protein | - |
| ACM6AF_RS10325 (ACM6AF_10330) | - | 2062881..2063060 (-) | 180 | WP_000438352.1 | hypothetical protein | - |
| ACM6AF_RS10330 (ACM6AF_10335) | - | 2063074..2063310 (-) | 237 | WP_001121116.1 | helix-turn-helix domain-containing protein | - |
| ACM6AF_RS10335 (ACM6AF_10340) | - | 2063462..2063776 (+) | 315 | WP_000333630.1 | helix-turn-helix domain-containing protein | - |
| ACM6AF_RS10340 (ACM6AF_10345) | - | 2063789..2064250 (+) | 462 | WP_000525004.1 | hypothetical protein | - |
| ACM6AF_RS10345 (ACM6AF_10350) | - | 2064434..2065366 (+) | 933 | WP_000392183.1 | hypothetical protein | - |
| ACM6AF_RS10350 (ACM6AF_10355) | - | 2065346..2065525 (-) | 180 | WP_000337827.1 | hypothetical protein | - |
| ACM6AF_RS10355 (ACM6AF_10360) | - | 2065638..2066684 (+) | 1047 | WP_001145722.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 15980.48 Da Isoelectric Point: 5.8724
>NTDB_id=1098624 ACM6AF_RS10275 WP_000934782.1 2058441..2058869(-) (ssbA) [Staphylococcus aureus strain AG21-0606]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVAADSVQFLEPKNSNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVAADSVQFLEPKNSNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
Nucleotide
Download Length: 429 bp
>NTDB_id=1098624 ACM6AF_RS10275 WP_000934782.1 2058441..2058869(-) (ssbA) [Staphylococcus aureus strain AG21-0606]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGCAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAGCAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGCAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAGCAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.721 |
100 |
0.711 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.599 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
74.648 |
0.437 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.657 |
100 |
0.43 |
| ssbA | Streptococcus mutans UA159 |
41.549 |
100 |
0.415 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.141 |
100 |
0.401 |