Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABXG87_RS04405 Genome accession   NZ_AP031488
Coordinates   969891..970730 (+) Length   279 a.a.
NCBI ID   WP_070476066.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 964891..975730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS04375 (Ssa13956_08070) - 965308..965835 (+) 528 WP_002883896.1 ECF transporter S component -
  ABXG87_RS04380 (Ssa13956_08080) - 965858..966373 (+) 516 WP_004182431.1 transcription repressor NadR -
  ABXG87_RS04385 (Ssa13956_08090) - 966468..967157 (+) 690 WP_045772410.1 XRE family transcriptional regulator -
  ABXG87_RS04390 (Ssa13956_08100) ylqF 967286..968140 (+) 855 WP_014634567.1 ribosome biogenesis GTPase YlqF -
  ABXG87_RS04395 (Ssa13956_08110) - 968127..968897 (+) 771 WP_045768651.1 ribonuclease HII -
  ABXG87_RS04400 (Ssa13956_08120) - 968904..969824 (+) 921 WP_045768652.1 ROK family protein -
  ABXG87_RS04405 (Ssa13956_08130) dprA 969891..970730 (+) 840 WP_070476066.1 DNA-processing protein DprA Machinery gene
  ABXG87_RS04410 (Ssa13956_08140) topA 970898..973042 (+) 2145 WP_004182436.1 type I DNA topoisomerase -
  ABXG87_RS04415 (Ssa13956_08150) - 973225..973899 (+) 675 WP_004182437.1 ABC transporter ATP-binding protein -
  ABXG87_RS04420 (Ssa13956_08160) - 973904..974632 (+) 729 WP_229050122.1 lantibiotic ABC transporter permease -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 31279.22 Da        Isoelectric Point: 8.6585

>NTDB_id=109796 ABXG87_RS04405 WP_070476066.1 969891..970730(+) (dprA) [Streptococcus salivarius strain NBRC 13956]
MNNFELFKLKAAGLTNLNILNILDYQKTQDRKLSLRDMAVVSKSKNAVLFMEKYKSLDIKQLKEQFDRFPTLSIFDKEYP
IELKHTYNPPVLLYYQGNLDLLSKPKLAVVGARKCSETGKQSVRKIVSELGNHFTIVSGLARGIDTCAHMEALKNKGNTI
AVIGTGLDVYYPKENKALQDYMAKNHLVLTEYGPGEQPLKYHFPERNRIISGLCQGVMVVEAKLRSGSLITCERAMEEGR
DVFAIPGNILDGKSDGCHHLIQEGAKCITTGFDILSEFS

Nucleotide


Download         Length: 840 bp        

>NTDB_id=109796 ABXG87_RS04405 WP_070476066.1 969891..970730(+) (dprA) [Streptococcus salivarius strain NBRC 13956]
ATGAATAATTTTGAACTTTTTAAACTTAAAGCCGCTGGGTTGACGAATTTGAATATCTTAAATATTTTGGACTATCAAAA
GACTCAAGATAGAAAATTGAGTTTACGTGATATGGCAGTGGTATCCAAGTCTAAAAATGCCGTTCTTTTTATGGAAAAGT
ATAAGAGTTTAGATATTAAGCAACTCAAAGAACAATTCGACCGTTTTCCTACGTTATCGATTTTTGATAAAGAATATCCC
ATTGAGCTGAAGCATACCTATAATCCTCCTGTCCTCCTTTATTATCAGGGGAATCTTGATTTACTGAGTAAACCAAAGCT
AGCTGTTGTTGGGGCAAGAAAGTGTTCTGAAACAGGCAAACAGTCTGTCCGTAAAATTGTTAGTGAACTTGGGAATCACT
TTACTATTGTGAGTGGATTGGCGCGTGGGATTGATACTTGTGCGCATATGGAGGCCTTGAAAAATAAGGGAAACACTATT
GCAGTTATCGGGACAGGACTTGATGTTTATTATCCTAAAGAAAATAAAGCTTTGCAGGACTATATGGCCAAAAATCATTT
AGTTCTTACTGAATATGGACCAGGTGAGCAGCCTCTCAAGTACCACTTTCCTGAACGCAATCGGATTATTTCTGGATTGT
GTCAAGGAGTTATGGTTGTAGAAGCTAAGCTTCGCTCAGGAAGTCTGATTACTTGTGAGCGTGCCATGGAAGAAGGTAGA
GATGTTTTTGCTATTCCAGGAAATATTTTAGATGGAAAGTCAGATGGATGCCATCACTTAATTCAGGAGGGTGCAAAGTG
CATTACGACAGGGTTTGACATCCTTTCAGAGTTTTCTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

72.043

100

0.72
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus mitis SK321

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

62.95

99.642

0.627
  dprA Lactococcus lactis subsp. cremoris KW2

59.712

99.642

0.595
  dprA Latilactobacillus sakei subsp. sakei 23K

40.927

92.832

0.38
  dprA Staphylococcus aureus N315

41.296

88.53

0.366
  dprA Acinetobacter baumannii D1279779

45.133

81.004

0.366
  dprA Acinetobacter baumannii strain A118

45.133

81.004

0.366
  dprA Bacillus subtilis subsp. subtilis str. 168

48.095

75.269

0.362

Multiple sequence alignment