Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACM0O0_RS17160 Genome accession   NZ_CP180689
Coordinates   3668391..3669617 (+) Length   408 a.a.
NCBI ID   WP_416040748.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate nanjing     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3663391..3674617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0O0_RS17125 rimP 3664061..3664585 (-) 525 WP_016144169.1 ribosome maturation factor RimP -
  ACM0O0_RS17145 secG 3665223..3665552 (-) 330 WP_002115012.1 preprotein translocase subunit SecG -
  ACM0O0_RS17150 tpiA 3665565..3666359 (-) 795 WP_057104882.1 triose-phosphate isomerase -
  ACM0O0_RS17155 pilB 3666651..3668363 (+) 1713 WP_416040747.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACM0O0_RS17160 pilC 3668391..3669617 (+) 1227 WP_416040748.1 type II secretion system F family protein Machinery gene
  ACM0O0_RS17165 pilD 3669617..3670477 (+) 861 WP_416040749.1 prepilin peptidase Machinery gene
  ACM0O0_RS17170 coaE 3670479..3671075 (+) 597 WP_216946733.1 dephospho-CoA kinase -
  ACM0O0_RS17175 - 3671072..3671986 (-) 915 WP_062849622.1 DMT family transporter -
  ACM0O0_RS17180 rlmB 3672022..3672771 (-) 750 WP_416040750.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACM0O0_RS17185 - 3672874..3673200 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  ACM0O0_RS17190 - 3673277..3674587 (-) 1311 WP_239935761.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45026.47 Da        Isoelectric Point: 9.8960

>NTDB_id=1097478 ACM0O0_RS17160 WP_416040748.1 3668391..3669617(+) (pilC) [Acinetobacter lactucae isolate nanjing]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAIIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1097478 ACM0O0_RS17160 WP_416040748.1 3668391..3669617(+) (pilC) [Acinetobacter lactucae isolate nanjing]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGAGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGGGTAACTGTTCGTAATATTCGAGAAAAGC
GTAAAAATATTCTTGAGGGTTTATTCAAGAAGAAAGTATCAACACTCGATATCACGATTTTTACCAGACAACTTGCAACA
ATGATGAAAGCAGGGGTTCCACTGGTACAAGGCTTTGAAATTGTAGCGGAAGGTCTAGAAAACCCAGCCATGCGCGAGGT
AGTACTCGGTATTAAAGGCGAAGTTGAAGGTGGTAGTACTTTTGCTTCGGCTTTAAGAAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGTGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGCGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTTAAACAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTTATCGTGGTTGCCGTGGTTGT
TACCATTATTTTGATGGTTAAAGTCGTTCCCGTTTTCCAAGACCTGTTTTCATCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTAAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATCATTGTGATTGGAGCAATTATTGCT
GCATTTTTGGAAGCCAAAAAGCGTAGTAAAAAATTCCGTGATGGTTTAGATAAACTTACCCTGAAACTACCTATCTTTGG
TGATCTGGTTTACAAGGCAATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCAGGTGTTCCGCTTATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTTATTTATGAACAAGCCGTCATGAAAATTCGTGAAGATGTTGCT
ACAGGCCAACAACTTCAATTTGCGATGCGCGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTAGATAAAGTTGCAACGTACTATGAAAATGAAGTTGATAATGCCGTTGATGGCT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTACTTGTAGGCGGTCTGGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.794

100

0.978
  pilC Acinetobacter baylyi ADP1

86.029

100

0.86
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

36.908

98.284

0.363

Multiple sequence alignment