Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACM0O0_RS17165 Genome accession   NZ_CP180689
Coordinates   3669617..3670477 (+) Length   286 a.a.
NCBI ID   WP_416040749.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate nanjing     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3664617..3675477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0O0_RS17145 secG 3665223..3665552 (-) 330 WP_002115012.1 preprotein translocase subunit SecG -
  ACM0O0_RS17150 tpiA 3665565..3666359 (-) 795 WP_057104882.1 triose-phosphate isomerase -
  ACM0O0_RS17155 pilB 3666651..3668363 (+) 1713 WP_416040747.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACM0O0_RS17160 pilC 3668391..3669617 (+) 1227 WP_416040748.1 type II secretion system F family protein Machinery gene
  ACM0O0_RS17165 pilD 3669617..3670477 (+) 861 WP_416040749.1 prepilin peptidase Machinery gene
  ACM0O0_RS17170 coaE 3670479..3671075 (+) 597 WP_216946733.1 dephospho-CoA kinase -
  ACM0O0_RS17175 - 3671072..3671986 (-) 915 WP_062849622.1 DMT family transporter -
  ACM0O0_RS17180 rlmB 3672022..3672771 (-) 750 WP_416040750.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACM0O0_RS17185 - 3672874..3673200 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  ACM0O0_RS17190 - 3673277..3674587 (-) 1311 WP_239935761.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32223.74 Da        Isoelectric Point: 7.1045

>NTDB_id=1097479 ACM0O0_RS17165 WP_416040749.1 3669617..3670477(+) (pilD) [Acinetobacter lactucae isolate nanjing]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPELPIIEHEKLTLNKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1097479 ACM0O0_RS17165 WP_416040749.1 3669617..3670477(+) (pilD) [Acinetobacter lactucae isolate nanjing]
ATGCAAGAAATTATTGCTTATTTCATTCAGAACTTAACTGCACTTTATATTGCTGTTGCACTATTGAGCCTGTGTATTGG
TAGTTTTTTGAATGTGGTGATTTATCGCACCCCAAGAATGATGGAGCAAGATTGGCAGCAGGAGTGTCAAATGTTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAATAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTCGGTCCAACACTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTGCTCCCCGACCGT
TTTACCTTGCCTTTGGCTGCTCTCGGCTTAGGTATTAATACATTTAATATTTACACCTCGCCTAACTCAGCTATTTGGGG
ATATTTAATCGGCTTTTTATGCCTTTGGATTGTGTACTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTGGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTACTAAAATTGCGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

96.503

100

0.965
  pilD Acinetobacter nosocomialis M2

96.154

100

0.962
  pilD Vibrio cholerae strain A1552

52.941

95.105

0.503
  pilD Vibrio campbellii strain DS40M4

52.574

95.105

0.5
  pilD Neisseria gonorrhoeae MS11

48.106

92.308

0.444

Multiple sequence alignment