Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACM2ZB_RS19770 Genome accession   NZ_CP180589
Coordinates   4292405..4293664 (-) Length   419 a.a.
NCBI ID   WP_416058588.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain ZSL2493     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4287405..4298664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM2ZB_RS19740 (ACM2ZB_19740) - 4287775..4288254 (+) 480 WP_416056684.1 hypothetical protein -
  ACM2ZB_RS19745 (ACM2ZB_19745) - 4288349..4288801 (+) 453 WP_416056685.1 hypothetical protein -
  ACM2ZB_RS19750 (ACM2ZB_19750) - 4288810..4289487 (+) 678 WP_005410804.1 response regulator transcription factor -
  ACM2ZB_RS19755 (ACM2ZB_19755) - 4289450..4290820 (+) 1371 WP_313441789.1 HAMP domain-containing sensor histidine kinase -
  ACM2ZB_RS19760 (ACM2ZB_19760) coaE 4290910..4291521 (-) 612 WP_416056686.1 dephospho-CoA kinase -
  ACM2ZB_RS19765 (ACM2ZB_19765) - 4291532..4292395 (-) 864 WP_313441785.1 A24 family peptidase -
  ACM2ZB_RS19770 (ACM2ZB_19770) pilC 4292405..4293664 (-) 1260 WP_416058588.1 type II secretion system F family protein Machinery gene
  ACM2ZB_RS19775 (ACM2ZB_19775) - 4294017..4294412 (+) 396 WP_416056687.1 pilin -
  ACM2ZB_RS19780 (ACM2ZB_19780) pilB 4294531..4296258 (+) 1728 WP_416056688.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACM2ZB_RS19785 (ACM2ZB_19785) pilR 4296473..4297846 (-) 1374 WP_416056689.1 sigma-54-dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45787.23 Da        Isoelectric Point: 10.1591

>NTDB_id=1096863 ACM2ZB_RS19770 WP_416058588.1 4292405..4293664(-) (pilC) [Stenotrophomonas maltophilia strain ZSL2493]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKAKPKPLFGGSGKPISTKD
IAFFSRQMATMMKSGVPIVSALEIIGSGHKNVRMKKMVDSIRTDIEGGSSLYEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVIAVALLVSAILLIFVVPQFEDVFKSFGADLPAFTQMIVAASRFMVAWWWL
IAIIVIGSIVGFVMAYKRSPKMQHGMDRFILKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQTNMFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGVVV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1096863 ACM2ZB_RS19770 WP_416058588.1 4292405..4293664(-) (pilC) [Stenotrophomonas maltophilia strain ZSL2493]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCCGTGGCCCGCGCCACGATGGAACTGCAACCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGTGTGAAGATGAAAGGCGAGCAGCTGGCGAAGAACGCCAATCTGCTGCGCGCCGAGCTGCGCCGCC
AGGGGATCAATCCCGGGCAGGTGAAGGCCAAGCCCAAGCCCCTTTTCGGCGGCTCCGGCAAGCCCATCAGCACCAAGGAC
ATTGCCTTCTTCAGCCGTCAGATGGCGACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGAAATCATTGGCAG
TGGGCACAAGAACGTGCGCATGAAAAAGATGGTCGACAGCATCCGCACCGACATCGAGGGCGGCTCGTCGCTGTATGAGG
CGATCAGCAAGCACCCGGTGCAGTTCGATGAGTTGTACCGGAACCTGGTGCGCGCCGGCGAGGGTGCCGGCGTATTGGAA
ACGGTGCTGGACACCGTAGCCAACTACAAAGAGAACATTGAAGCCCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTACCC
GGCCATGGTGATCGCTGTGGCACTGTTGGTCAGCGCCATCCTGCTGATCTTCGTGGTGCCCCAGTTCGAGGACGTGTTCA
AGAGCTTCGGCGCCGACCTGCCCGCCTTCACCCAGATGATCGTGGCCGCATCACGCTTCATGGTCGCGTGGTGGTGGCTG
ATCGCCATCATCGTCATCGGCAGCATCGTCGGCTTCGTCATGGCGTACAAACGCTCGCCGAAGATGCAACATGGGATGGA
CCGGTTCATCCTGAAGGTGCCGGTGATCGGCCAGATCATGCATAACAGCGCCATCGCGCGGTTCTCGCGCACCACGGCGG
TGACCTTCAAGGCTGGCGTGCCGCTGGTGGAGGCCCTGGGCATCGTTGCCGGCGCCACCGGCAACAAGGTCTACGAAGAA
GCCGTGCTGCGCATGCGTGACGACGTCTCGGTCGGCTACCCGGTCAACATGGCGATGAAGCAGACCAACATGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCCGGCGCACTGGATGCCATGCTGTTCAAGGTGGCCGAGTATTATG
AGCAGGAGGTCAACAATGCCGTTGACGCCTTGAGCAGCCTGCTCGAACCGATGATCATGGTGTTCATCGGCGTGGTAGTG
GGCGGCATGGTCGTCGGCATGTACCTGCCGATCTTCAAGCTCGCCTCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.133

95.227

0.506
  pilC Pseudomonas stutzeri DSM 10701

52.778

94.511

0.499
  pilC Acinetobacter baumannii D1279779

50.86

97.136

0.494
  pilC Acinetobacter baylyi ADP1

49.754

96.897

0.482
  pilG Neisseria gonorrhoeae MS11

44.332

94.749

0.42
  pilG Neisseria meningitidis 44/76-A

43.719

94.988

0.415
  pilC Vibrio cholerae strain A1552

41.626

96.897

0.403
  pilC Vibrio campbellii strain DS40M4

40.898

95.704

0.391
  pilC Thermus thermophilus HB27

37.965

96.181

0.365

Multiple sequence alignment