Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACM2ZB_RS19785 Genome accession   NZ_CP180589
Coordinates   4296473..4297846 (-) Length   457 a.a.
NCBI ID   WP_416056689.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain ZSL2493     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4291473..4302846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM2ZB_RS19765 (ACM2ZB_19765) - 4291532..4292395 (-) 864 WP_313441785.1 A24 family peptidase -
  ACM2ZB_RS19770 (ACM2ZB_19770) pilC 4292405..4293664 (-) 1260 WP_416058588.1 type II secretion system F family protein Machinery gene
  ACM2ZB_RS19775 (ACM2ZB_19775) - 4294017..4294412 (+) 396 WP_416056687.1 pilin -
  ACM2ZB_RS19780 (ACM2ZB_19780) pilB 4294531..4296258 (+) 1728 WP_416056688.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACM2ZB_RS19785 (ACM2ZB_19785) pilR 4296473..4297846 (-) 1374 WP_416056689.1 sigma-54-dependent transcriptional regulator Regulator
  ACM2ZB_RS19790 (ACM2ZB_19790) - 4297901..4299514 (-) 1614 WP_313441775.1 sensor histidine kinase -
  ACM2ZB_RS19795 (ACM2ZB_19795) sucC 4299982..4301151 (+) 1170 WP_108766110.1 ADP-forming succinate--CoA ligase subunit beta -
  ACM2ZB_RS19800 (ACM2ZB_19800) sucD 4301173..4302048 (+) 876 WP_005410793.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49638.90 Da        Isoelectric Point: 6.5120

>NTDB_id=1096865 ACM2ZB_RS19785 WP_416056689.1 4296473..4297846(-) (pilR) [Stenotrophomonas maltophilia strain ZSL2493]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNSERPAPGPATEEAARLLGSSPAMDVLRATIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFIPVNCGAIPTELMESEFFGHRKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRALGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPD
LAGSILARLARSHGRTTPLLAPSALDALAQYGFPGNVRELENILERALALAEEDRIGADDLRLPQHGPRAHGSAAPPEAV
VDLHPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1096865 ACM2ZB_RS19785 WP_416056689.1 4296473..4297846(-) (pilR) [Stenotrophomonas maltophilia strain ZSL2493]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAGCGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACTGCCGCCAATCTGGCCGAAGCCCGCGAACTGCTGGCCAGCAATCCCTATGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGATCTGGCCGTGGAAGCCCTGAAGGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
GGATATCGGCGTGCTGCGCGGGCTGGTCAAGCACGCGCTGGAACTGAACAACAGCGAGCGCCCTGCCCCCGGCCCGGCCA
CTGAAGAGGCGGCCCGCCTGCTCGGCAGTTCGCCGGCCATGGACGTGCTGCGCGCCACCATCGGCAAGGTCGCCCGCAGC
CAGGCCCCGGTCTACATCCTGGGCGAATCGGGCGTGGGCAAGGAACTGGTGGCGCGCACCATCCACGCGCAGGGCGCACG
CGCTGCCGGCCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGACCGAACTGATGGAAAGCGAGTTCTTCGGCCACCGCA
AGGGCAGCTTCACCGGCGCCCATGCGGACAAGCCGGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAA
GTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGCGCCCTGGGCGCGGC
CAACGAAGAGCCGGTGGACGTGCGCATCCTGTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCATGACCTGTACTACCGCATCAACGTGATCGAGCTGAAGGTGCCGCCGCTGCGCGAGCGCCGCCAGGACCTGCCGGAC
CTGGCCGGATCGATCCTGGCCCGACTGGCCCGCAGCCATGGCCGCACCACGCCGCTGCTGGCGCCTTCGGCGCTGGATGC
ACTGGCCCAGTACGGCTTCCCGGGCAATGTGCGCGAACTGGAGAACATCCTGGAACGGGCGCTGGCCCTGGCCGAGGAAG
ACCGCATTGGTGCCGACGACCTGCGCCTGCCGCAGCACGGCCCGCGTGCGCACGGCAGCGCTGCGCCGCCCGAAGCGGTG
GTCGACCTGCACCCTGGCAGTGCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCAGCGCGATCCAGCGCGCGCTGGA
AGAAAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGCATCACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(414-454)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.939

99.781

0.628
  pilR Acinetobacter baumannii strain A118

48.268

100

0.488
  luxO Vibrio cholerae strain A1552

36.913

97.812

0.361

Multiple sequence alignment