Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACM0CX_RS21085 Genome accession   NZ_CP180564
Coordinates   4562750..4563991 (+) Length   413 a.a.
NCBI ID   WP_411637632.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain BJ018     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4557750..4568991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0CX_RS21060 ampD 4558084..4558656 (-) 573 WP_324019715.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACM0CX_RS21065 - 4558803..4559273 (+) 471 WP_282464816.1 TIGR02281 family clan AA aspartic protease -
  ACM0CX_RS21070 nadC 4559279..4560136 (+) 858 WP_282464815.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACM0CX_RS21075 - 4560459..4560923 (+) 465 WP_411637630.1 pilin -
  ACM0CX_RS21080 pilB 4560928..4562634 (+) 1707 WP_411637631.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  ACM0CX_RS21085 pilC 4562750..4563991 (+) 1242 WP_411637632.1 type II secretion system F family protein Machinery gene
  ACM0CX_RS21090 pilD 4564014..4564886 (+) 873 WP_331414179.1 A24 family peptidase Machinery gene
  ACM0CX_RS21095 coaE 4564905..4565519 (+) 615 WP_411637633.1 dephospho-CoA kinase -
  ACM0CX_RS21100 zapD 4565557..4566279 (+) 723 WP_411637634.1 cell division protein ZapD -
  ACM0CX_RS21105 yacG 4566289..4566483 (+) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  ACM0CX_RS21110 mutT 4566544..4566957 (-) 414 WP_016352173.1 8-oxo-dGTP diphosphatase MutT -
  ACM0CX_RS21115 - 4566966..4568150 (-) 1185 WP_411637635.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45452.60 Da        Isoelectric Point: 9.8637

>NTDB_id=1096655 ACM0CX_RS21085 WP_411637632.1 4562750..4563991(+) (pilC) [Aeromonas hydrophila strain BJ018]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIA
LTIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1096655 ACM0CX_RS21085 WP_411637632.1 4562750..4563991(+) (pilC) [Aeromonas hydrophila strain BJ018]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTGAATCGCAAGGGCCA
GAAGGTCTCCGGCGAATTACAGGCCGACAGCATCAACACGGTCAAGGCAGAGCTGCGCAAACAGGGTGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATTAAGCCGATGGACATCGCCGTCGTCTCCCGC
CAGATCACCACCATGCTGTCAGCCGGCGTACCTCTGGTCCAAAGCCTGCAGATCATCGCTCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTCATGGGCCAGATTGCCGCCGATGTGGAGACCGGCACCCCCATGTCCGAAGCGCTGCGCCGCCATCCCC
GTCACTTTGACGATCTCTACTGCGATCTGGTGGAGGCTGGCGAACAATCCGGCGCCCTGGAGACCATCTACGATCGCATC
GCTACCTATCGCGAGAAATCGGAAGCCCTCAAGTCCAAGATCAAGAAAGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATTGTCGTCACCTCCATCCTGCTGCTGTTCGTCATTCCTCAGTTCGAGGACATCTTCAAGAGCTTCGGCGCCGAGC
TGCCCATCTTCACCCAGTTCGTCATCGGCATCTCCCGTTTCATGCAGAACTGGTGGTATGTGATCTTTGGCGGCATAGCG
CTCACCATCTTTCTCTACGTGCGCGCCTGGCGCGCCTCCCAGAAGGTCAAGGACAACACCGACAAGTTCGTACTGACCAT
CCCCGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCGCGCTTCGCCCGCACCCTCTCCACTACCTTCTCCGCCGGTA
TCCCACTGGTGGATGCTCTGATCTCTGCGGCAGGCGCCTCTGGTAACTATGTCTACCGCACTGCCGTCATGGCCATTCGT
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCTATGCGCACCGTCGATCTGTTCCCGGACATGGTGATCCAGATGGT
GATGATCGGCGAGGAGTCTGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTAGACGACT
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGCTGGGGGTTCTGGTCGGCGGCATGGTGGTCGCC
ATGTATCTGCCCATCTTCAAACTGGGATCGGTGATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.071

95.884

0.547
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Legionella pneumophila strain ERS1305867

51.358

98.063

0.504
  pilC Acinetobacter baylyi ADP1

52.141

96.126

0.501
  pilC Vibrio cholerae strain A1552

47.739

96.368

0.46
  pilC Vibrio campbellii strain DS40M4

46.348

96.126

0.446
  pilG Neisseria gonorrhoeae MS11

40

98.063

0.392
  pilG Neisseria meningitidis 44/76-A

39.753

98.063

0.39
  pilC Thermus thermophilus HB27

37.75

96.852

0.366

Multiple sequence alignment