Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACM0CX_RS21090 Genome accession   NZ_CP180564
Coordinates   4564014..4564886 (+) Length   290 a.a.
NCBI ID   WP_331414179.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain BJ018     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4559014..4569886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0CX_RS21070 nadC 4559279..4560136 (+) 858 WP_282464815.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACM0CX_RS21075 - 4560459..4560923 (+) 465 WP_411637630.1 pilin -
  ACM0CX_RS21080 pilB 4560928..4562634 (+) 1707 WP_411637631.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  ACM0CX_RS21085 pilC 4562750..4563991 (+) 1242 WP_411637632.1 type II secretion system F family protein Machinery gene
  ACM0CX_RS21090 pilD 4564014..4564886 (+) 873 WP_331414179.1 A24 family peptidase Machinery gene
  ACM0CX_RS21095 coaE 4564905..4565519 (+) 615 WP_411637633.1 dephospho-CoA kinase -
  ACM0CX_RS21100 zapD 4565557..4566279 (+) 723 WP_411637634.1 cell division protein ZapD -
  ACM0CX_RS21105 yacG 4566289..4566483 (+) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  ACM0CX_RS21110 mutT 4566544..4566957 (-) 414 WP_016352173.1 8-oxo-dGTP diphosphatase MutT -
  ACM0CX_RS21115 - 4566966..4568150 (-) 1185 WP_411637635.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32554.86 Da        Isoelectric Point: 6.7409

>NTDB_id=1096656 ACM0CX_RS21090 WP_331414179.1 4564014..4564886(+) (pilD) [Aeromonas hydrophila strain BJ018]
MLIITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATYPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLTGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1096656 ACM0CX_RS21090 WP_331414179.1 4564014..4564886(+) (pilD) [Aeromonas hydrophila strain BJ018]
ATGTTGATTATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTTTCGCTGGTATTTCTCTTTTCCCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCGGAAACACAGCCGCAGCAGGAAGAGCGCTACAACCTGATGGTGCCGCGCTCTGCCTGTCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC
GGCCCGTTATCCCCTGGTAGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCAGCAACATACCCACCGGGTTGGGGGT
TGCTGGCCGCCCTGTTGCTCACCTGGGTACTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCTGACCAG
CTGACCCTGCCACTGCTGTGGGGCGGTCTGCTGTTCAATCTGACAGGGGGATTTGTACCGCTGGCCGATGCGGTTATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAAGCACTGCCCATCGTGTTGCTGCTCTCTTCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATTCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT
GGCCATTGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

61.189

98.621

0.603
  pilD Vibrio campbellii strain DS40M4

55.594

98.621

0.548
  pilD Acinetobacter baumannii D1279779

54.225

97.931

0.531
  pilD Acinetobacter nosocomialis M2

54.225

97.931

0.531
  pilD Neisseria gonorrhoeae MS11

49.451

94.138

0.466

Multiple sequence alignment