Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMXYO_RS03710 Genome accession   NZ_CP180550
Coordinates   828216..829436 (-) Length   406 a.a.
NCBI ID   WP_415887125.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD37_6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 823216..834436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYO_RS03685 (ACMXYO_03685) argJ 824365..825585 (+) 1221 WP_415887118.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACMXYO_RS03690 (ACMXYO_03690) - 825585..826544 (+) 960 WP_415887120.1 Nudix family hydrolase -
  ACMXYO_RS03695 (ACMXYO_03695) - 826522..826749 (-) 228 WP_415887121.1 DNA gyrase inhibitor YacG -
  ACMXYO_RS03700 (ACMXYO_03700) coaE 826749..827351 (-) 603 WP_415887123.1 dephospho-CoA kinase -
  ACMXYO_RS03705 (ACMXYO_03705) pilD 827355..828203 (-) 849 WP_415887124.1 prepilin peptidase Machinery gene
  ACMXYO_RS03710 (ACMXYO_03710) pilC 828216..829436 (-) 1221 WP_415887125.1 type II secretion system F family protein Machinery gene
  ACMXYO_RS03715 (ACMXYO_03715) pilB 829453..831168 (-) 1716 WP_415887126.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMXYO_RS03720 (ACMXYO_03720) - 831417..831932 (+) 516 WP_415887127.1 pilin -
  ACMXYO_RS03725 (ACMXYO_03725) - 832111..832452 (+) 342 WP_415887128.1 hypothetical protein -
  ACMXYO_RS03730 (ACMXYO_03730) nadC 832535..833380 (-) 846 WP_415887129.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACMXYO_RS03735 (ACMXYO_03735) ampD 833482..834027 (+) 546 WP_415887130.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44065.45 Da        Isoelectric Point: 9.7288

>NTDB_id=1096464 ACMXYO_RS03710 WP_415887125.1 828216..829436(-) (pilC) [Neptuniibacter sp. QD37_6]
MAKNANMYTFTWQGKDKSGNKSKGKIDAISITSAKAQLRKQGILTSKISKERSAGLFSAKNKPVKPVDIAFFTRQMATMM
RSGVPLLQGLEITAGGIEKQKLKDIVYEIKNDVNSGTDFSTSLTKHPQHFDDLYCNLVNAGEQSGALDAMLDRIATYKEK
LESLKAKIKKALTYPTAVIIVGIIVSAILLVKVVPQFEDVFKSFGAELPAFTKFVINLSEIAQEWWWIVLIATALFGFAF
QKATQKSAKFRDSVDKAILKIPIIGQILHNASIARFARTLSTTFAAGVPLVNALDSAAGASGNALYRDAILQIKNGVSTG
QSLQNAVTMTGVFPNMTIQMIAIGEEAGSLEMMLEKVADFYEEQVDNAVDNLSSLLEPLIMAVLGVLVGGLVVAMYLPIF
QLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1096464 ACMXYO_RS03710 WP_415887125.1 828216..829436(-) (pilC) [Neptuniibacter sp. QD37_6]
ATGGCTAAAAATGCCAACATGTACACTTTTACCTGGCAAGGAAAAGATAAAAGCGGTAATAAAAGTAAAGGCAAAATTGA
TGCAATCAGCATAACCTCTGCTAAAGCACAACTGCGTAAACAAGGTATCTTAACATCCAAAATATCCAAGGAGCGTTCTG
CGGGTTTATTTAGCGCGAAAAACAAACCAGTAAAACCCGTAGATATTGCATTTTTTACTCGCCAAATGGCAACCATGATG
CGATCTGGGGTTCCACTTCTTCAAGGGTTAGAGATAACTGCTGGAGGCATCGAAAAACAAAAGCTAAAAGATATTGTTTA
TGAAATTAAAAATGATGTTAATAGCGGTACCGATTTTTCTACCTCTTTAACCAAACATCCTCAGCACTTTGATGACCTGT
ACTGCAACTTAGTTAACGCTGGTGAACAATCAGGTGCACTAGACGCAATGCTCGATCGTATTGCAACCTACAAGGAAAAG
CTGGAATCCCTTAAAGCTAAAATCAAAAAAGCCCTAACCTACCCAACTGCAGTAATCATAGTAGGTATAATCGTTTCCGC
GATCCTACTCGTTAAGGTAGTTCCTCAATTTGAAGACGTATTTAAGAGCTTTGGGGCTGAACTTCCCGCTTTCACAAAGT
TTGTTATAAACCTTTCTGAAATCGCCCAAGAATGGTGGTGGATAGTTTTAATCGCTACAGCTCTATTTGGTTTCGCGTTC
CAAAAAGCTACGCAAAAATCAGCTAAGTTTAGAGACAGTGTTGATAAAGCTATTCTGAAAATACCTATTATAGGGCAAAT
TCTTCATAACGCCTCTATCGCACGATTTGCTCGAACATTATCGACTACATTTGCTGCCGGTGTCCCTTTAGTCAATGCTT
TAGATTCCGCGGCTGGCGCATCAGGCAACGCCCTTTACCGTGATGCAATCCTACAAATTAAGAACGGCGTATCAACGGGC
CAATCCTTACAAAATGCGGTCACAATGACTGGTGTTTTTCCAAACATGACTATCCAGATGATCGCCATAGGTGAGGAAGC
AGGTTCACTTGAAATGATGTTGGAAAAGGTAGCAGACTTCTACGAAGAACAGGTCGATAATGCTGTTGATAATTTATCCA
GCCTTTTAGAGCCACTTATTATGGCTGTGCTTGGCGTTCTCGTTGGCGGACTTGTTGTTGCCATGTATCTTCCAATCTTC
CAGCTTGGCCAAGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.194

97.783

0.579
  pilC Legionella pneumophila strain ERS1305867

56.02

100

0.562
  pilC Acinetobacter baumannii D1279779

55.25

98.522

0.544
  pilC Acinetobacter baylyi ADP1

52.723

99.507

0.525
  pilC Vibrio cholerae strain A1552

44

98.522

0.433
  pilG Neisseria meningitidis 44/76-A

42.462

98.03

0.416
  pilG Neisseria gonorrhoeae MS11

42.211

98.03

0.414
  pilC Vibrio campbellii strain DS40M4

41.562

97.783

0.406
  pilC Thermus thermophilus HB27

36.567

99.015

0.362

Multiple sequence alignment