Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACMXYO_RS03705 Genome accession   NZ_CP180550
Coordinates   827355..828203 (-) Length   282 a.a.
NCBI ID   WP_415887124.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD37_6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 822355..833203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYO_RS03685 (ACMXYO_03685) argJ 824365..825585 (+) 1221 WP_415887118.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACMXYO_RS03690 (ACMXYO_03690) - 825585..826544 (+) 960 WP_415887120.1 Nudix family hydrolase -
  ACMXYO_RS03695 (ACMXYO_03695) - 826522..826749 (-) 228 WP_415887121.1 DNA gyrase inhibitor YacG -
  ACMXYO_RS03700 (ACMXYO_03700) coaE 826749..827351 (-) 603 WP_415887123.1 dephospho-CoA kinase -
  ACMXYO_RS03705 (ACMXYO_03705) pilD 827355..828203 (-) 849 WP_415887124.1 prepilin peptidase Machinery gene
  ACMXYO_RS03710 (ACMXYO_03710) pilC 828216..829436 (-) 1221 WP_415887125.1 type II secretion system F family protein Machinery gene
  ACMXYO_RS03715 (ACMXYO_03715) pilB 829453..831168 (-) 1716 WP_415887126.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMXYO_RS03720 (ACMXYO_03720) - 831417..831932 (+) 516 WP_415887127.1 pilin -
  ACMXYO_RS03725 (ACMXYO_03725) - 832111..832452 (+) 342 WP_415887128.1 hypothetical protein -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 31817.86 Da        Isoelectric Point: 6.9892

>NTDB_id=1096463 ACMXYO_RS03705 WP_415887124.1 827355..828203(-) (pilD) [Neptuniibacter sp. QD37_6]
MNTIIFDPVLAIACAFLFSLCVGSFLNVVIHRLPIMMQKEWEREIKDNFDIDQEPYNLSVPASTCPKCQHKIRWYENIPV
ISWIFLRAKCSSCGLHIPFRYPFVELFTAVCSAYAIYIYGFNLIGLSVVVLTWVLVCLIFIDIDHQLLPDRLTLPLLWLG
LFVNSFGLFSSLEHAVYGAMAGYLSLWSIYWAFKLLTGKEGMGYGDFKLLAALGAWAGVYQLPLIILLSSLVGAIIGIGM
MLFKNHSSQNPIPFGPYLAIAGWVALIWSDTLTTIYLQLIRI

Nucleotide


Download         Length: 849 bp        

>NTDB_id=1096463 ACMXYO_RS03705 WP_415887124.1 827355..828203(-) (pilD) [Neptuniibacter sp. QD37_6]
ATGAATACAATCATTTTTGATCCCGTGTTGGCTATCGCCTGCGCGTTTTTGTTTTCTCTTTGCGTCGGTAGTTTTTTAAA
CGTAGTCATACATCGTTTACCCATTATGATGCAAAAAGAATGGGAAAGAGAAATTAAGGACAACTTTGATATAGACCAAG
AGCCATATAATTTATCAGTTCCAGCCTCAACATGCCCAAAATGCCAACACAAAATCCGCTGGTATGAAAACATTCCTGTC
ATCAGTTGGATTTTCCTTCGGGCCAAATGTTCATCTTGTGGGCTGCATATCCCTTTTCGATACCCGTTTGTAGAACTATT
CACAGCTGTTTGCTCTGCGTACGCCATCTATATTTATGGCTTTAACCTTATTGGATTAAGCGTAGTAGTACTTACATGGG
TACTGGTATGCCTGATTTTTATAGATATTGATCATCAACTACTTCCCGACCGTTTAACTCTACCTTTGTTATGGCTAGGT
TTATTTGTTAACAGTTTTGGCCTTTTCAGTTCACTAGAACACGCTGTCTATGGTGCAATGGCAGGTTACCTAAGCTTATG
GTCAATCTACTGGGCATTTAAACTACTAACAGGCAAAGAAGGTATGGGATACGGTGATTTCAAACTACTCGCAGCCCTTG
GAGCCTGGGCTGGAGTCTATCAATTGCCGCTTATTATCCTCTTAAGCTCCCTCGTCGGTGCAATCATTGGTATTGGCATG
ATGCTATTTAAAAATCATTCATCTCAAAACCCTATCCCATTTGGGCCATATCTCGCGATTGCAGGCTGGGTAGCGCTGAT
ATGGAGCGATACTCTTACGACAATCTACCTGCAACTTATAAGAATCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(130-238)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

55.311

96.809

0.535
  pilD Acinetobacter nosocomialis M2

54.945

96.809

0.532
  pilD Vibrio cholerae strain A1552

52.297

100

0.525
  pilD Vibrio campbellii strain DS40M4

51.049

100

0.518
  pilD Neisseria gonorrhoeae MS11

46.067

94.681

0.436

Multiple sequence alignment