Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMXYP_RS03675 Genome accession   NZ_CP180546
Coordinates   857185..858405 (-) Length   406 a.a.
NCBI ID   WP_415883657.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD34_54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 852185..863405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYP_RS03650 (ACMXYP_03650) argJ 853333..854553 (+) 1221 WP_415883652.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACMXYP_RS03655 (ACMXYP_03655) - 854553..855512 (+) 960 WP_415883653.1 Nudix family hydrolase -
  ACMXYP_RS03660 (ACMXYP_03660) - 855490..855717 (-) 228 WP_415883654.1 DNA gyrase inhibitor YacG -
  ACMXYP_RS03665 (ACMXYP_03665) coaE 855714..856319 (-) 606 WP_415883655.1 dephospho-CoA kinase -
  ACMXYP_RS03670 (ACMXYP_03670) pilD 856323..857171 (-) 849 WP_415883656.1 prepilin peptidase Machinery gene
  ACMXYP_RS03675 (ACMXYP_03675) pilC 857185..858405 (-) 1221 WP_415883657.1 type II secretion system F family protein Machinery gene
  ACMXYP_RS03680 (ACMXYP_03680) pilB 858422..860137 (-) 1716 WP_415883658.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMXYP_RS03685 (ACMXYP_03685) - 860381..860902 (+) 522 WP_415883659.1 pilin -
  ACMXYP_RS03690 (ACMXYP_03690) - 861075..861416 (+) 342 WP_415883660.1 hypothetical protein -
  ACMXYP_RS03695 (ACMXYP_03695) nadC 861501..862346 (-) 846 WP_415883661.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACMXYP_RS03700 (ACMXYP_03700) ampD 862448..862993 (+) 546 WP_415883662.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43867.13 Da        Isoelectric Point: 9.7689

>NTDB_id=1096395 ACMXYP_RS03675 WP_415883657.1 857185..858405(-) (pilC) [Neptuniibacter sp. QD34_54]
MAKEAKLSTFTWQGKDKSGNKSKGKIDASTAAAAKAQLRKQGILTSRIAKERSAGLFSAKNKPIKPVDIAFFTRQMATMM
RSGVPLLQGLEITAGGIEKQKLKDVVYEIKNDVNSGTDFSTSLTKHPQHFDDLYCNLVNAGEQSGALDAMLDRIATYKEK
LESLKAKIKKALTYPTAVVIVGIIVSAILLVKVVPQFEDVFKSFGAELPAFTQFVINLSEIAQEWWWIVLIAAAAFGFAF
QKARQKSAKFRDSVDKAILKIPVIGQILHNASIARFARTLSTTFAAGVPLVNALDSAAGASGNALYRDAILQIKNGVSTG
QSLQNAVTMTGVFPNMTIQMIAIGEEAGSLEMMLEKVADFYEEQVDNAVDNLSSLLEPLIMAVLGVLVGGLVVAMYLPIF
QLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1096395 ACMXYP_RS03675 WP_415883657.1 857185..858405(-) (pilC) [Neptuniibacter sp. QD34_54]
ATGGCTAAAGAAGCCAAGCTTAGTACTTTCACCTGGCAAGGGAAAGACAAAAGCGGTAACAAAAGCAAAGGCAAAATCGA
TGCTTCGACTGCTGCTGCAGCTAAAGCGCAATTGCGTAAGCAAGGAATCTTAACCTCACGCATAGCTAAAGAACGCTCCG
CGGGATTATTTAGCGCAAAAAATAAACCTATTAAGCCCGTGGACATAGCCTTCTTTACCCGTCAAATGGCGACTATGATG
CGCTCCGGGGTTCCTTTACTTCAAGGTCTTGAAATTACCGCTGGTGGTATAGAGAAACAGAAGTTGAAAGATGTCGTTTA
TGAAATCAAGAATGATGTGAATAGCGGCACCGACTTTTCGACCTCTTTGACCAAACATCCTCAGCACTTCGACGATCTCT
ACTGCAATCTCGTAAACGCTGGTGAACAGTCTGGCGCATTAGACGCGATGCTAGATCGCATCGCGACATATAAAGAGAAG
TTAGAATCCCTAAAAGCGAAGATCAAAAAGGCACTTACCTACCCTACTGCAGTAGTAATTGTAGGCATAATCGTTTCTGC
GATCCTTCTCGTTAAAGTAGTTCCCCAGTTTGAGGATGTATTTAAGAGCTTTGGAGCAGAACTACCTGCATTCACACAGT
TTGTGATAAACCTTTCTGAAATTGCTCAAGAATGGTGGTGGATAGTTTTAATCGCTGCAGCAGCATTTGGTTTTGCATTC
CAAAAAGCTCGACAAAAATCAGCCAAATTTAGAGATAGTGTGGATAAAGCTATTCTCAAAATACCGGTTATAGGGCAAAT
TCTTCATAATGCTTCTATTGCACGATTTGCTCGAACATTATCGACTACCTTTGCCGCCGGCGTTCCATTGGTCAATGCTC
TGGATTCCGCTGCTGGCGCATCAGGTAACGCTCTTTACCGTGATGCTATCTTGCAAATTAAGAACGGCGTATCTACAGGT
CAATCCTTGCAAAACGCAGTTACCATGACAGGCGTTTTTCCAAACATGACGATCCAGATGATCGCCATAGGTGAGGAAGC
CGGTTCTCTTGAAATGATGCTAGAAAAGGTAGCAGACTTCTATGAAGAGCAGGTCGATAATGCAGTTGATAATTTATCAA
GCCTTTTAGAGCCTCTTATCATGGCTGTACTTGGCGTTCTCGTTGGTGGGCTTGTTGTTGCCATGTATCTCCCAATCTTC
CAGCTTGGTCAAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.214

100

0.594
  pilC Legionella pneumophila strain ERS1305867

56.75

98.522

0.559
  pilC Acinetobacter baumannii D1279779

55.25

98.522

0.544
  pilC Acinetobacter baylyi ADP1

53.616

98.768

0.53
  pilC Vibrio cholerae strain A1552

42.75

98.522

0.421
  pilG Neisseria meningitidis 44/76-A

42.714

98.03

0.419
  pilG Neisseria gonorrhoeae MS11

42.462

98.03

0.416
  pilC Vibrio campbellii strain DS40M4

41.147

98.768

0.406
  pilC Thermus thermophilus HB27

36.881

99.507

0.367

Multiple sequence alignment