Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACMXYP_RS03670 Genome accession   NZ_CP180546
Coordinates   856323..857171 (-) Length   282 a.a.
NCBI ID   WP_415883656.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD34_54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 851323..862171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYP_RS03650 (ACMXYP_03650) argJ 853333..854553 (+) 1221 WP_415883652.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACMXYP_RS03655 (ACMXYP_03655) - 854553..855512 (+) 960 WP_415883653.1 Nudix family hydrolase -
  ACMXYP_RS03660 (ACMXYP_03660) - 855490..855717 (-) 228 WP_415883654.1 DNA gyrase inhibitor YacG -
  ACMXYP_RS03665 (ACMXYP_03665) coaE 855714..856319 (-) 606 WP_415883655.1 dephospho-CoA kinase -
  ACMXYP_RS03670 (ACMXYP_03670) pilD 856323..857171 (-) 849 WP_415883656.1 prepilin peptidase Machinery gene
  ACMXYP_RS03675 (ACMXYP_03675) pilC 857185..858405 (-) 1221 WP_415883657.1 type II secretion system F family protein Machinery gene
  ACMXYP_RS03680 (ACMXYP_03680) pilB 858422..860137 (-) 1716 WP_415883658.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMXYP_RS03685 (ACMXYP_03685) - 860381..860902 (+) 522 WP_415883659.1 pilin -
  ACMXYP_RS03690 (ACMXYP_03690) - 861075..861416 (+) 342 WP_415883660.1 hypothetical protein -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 31729.71 Da        Isoelectric Point: 6.7237

>NTDB_id=1096394 ACMXYP_RS03670 WP_415883656.1 856323..857171(-) (pilD) [Neptuniibacter sp. QD34_54]
MNTLIFDPAWAIACAFLFSLCVGSFLNVVIHRLPIMMQREWEREVSAEEEIDQEPYNLSVPASTCPKCQHKIRWYENIPI
LSWIFLRAKCSSCGLHIPFRYPFVELFTAVCSAYAVYVYGFNLIGLSIVVLTWVLVCLIFIDIDHQLLPDRLTLPLLWLG
LFVNSFGGFASLEHAVYGAMAGYLSLWSIYWAFKLLTGKEGMGYGDFKLLAALGAWAGIYQLPLIILLSSLVGAIIGIGM
MLFKKHSSQTPIPFGPYLAIAGWIALIWGDTLTTIYLQLIRI

Nucleotide


Download         Length: 849 bp        

>NTDB_id=1096394 ACMXYP_RS03670 WP_415883656.1 856323..857171(-) (pilD) [Neptuniibacter sp. QD34_54]
ATGAATACACTTATTTTTGATCCCGCGTGGGCTATCGCCTGCGCGTTTTTATTTTCTCTATGTGTTGGCAGCTTTCTTAA
TGTAGTCATTCATCGCTTACCCATTATGATGCAAAGGGAATGGGAGAGAGAGGTATCTGCTGAAGAAGAGATCGATCAAG
AGCCTTATAACCTATCAGTACCAGCATCCACTTGCCCTAAGTGTCAACACAAAATCCGATGGTATGAAAACATACCTATT
CTCAGCTGGATTTTCCTTCGCGCGAAATGCTCATCATGTGGGCTGCATATCCCTTTTCGGTACCCGTTTGTAGAACTATT
TACTGCAGTCTGCTCTGCGTATGCTGTCTATGTTTACGGTTTTAACCTTATTGGATTAAGCATAGTTGTTCTGACATGGG
TGCTTGTTTGCCTGATATTTATAGATATTGATCATCAACTTCTACCTGACCGTTTAACCCTTCCCTTGCTATGGTTAGGC
TTATTCGTCAACAGTTTTGGGGGATTTGCATCTCTTGAACATGCGGTCTATGGCGCTATGGCAGGCTACCTAAGCTTATG
GTCAATCTACTGGGCATTTAAACTACTAACTGGCAAAGAAGGTATGGGGTATGGTGATTTTAAATTGCTTGCAGCTCTAG
GCGCTTGGGCAGGTATATATCAATTGCCACTGATTATTCTATTAAGCTCATTAGTCGGTGCGATAATTGGTATAGGTATG
ATGCTGTTTAAAAAACATTCATCTCAAACCCCTATTCCATTTGGCCCATATCTCGCAATTGCAGGATGGATAGCACTGAT
CTGGGGCGATACGCTGACGACAATTTACCTTCAACTTATAAGAATCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(130-238)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55.224

95.035

0.525
  pilD Acinetobacter baumannii D1279779

55.263

94.326

0.521
  pilD Acinetobacter nosocomialis M2

55.263

94.326

0.521
  pilD Vibrio campbellii strain DS40M4

50.699

100

0.514
  pilD Neisseria gonorrhoeae MS11

46.953

98.936

0.465

Multiple sequence alignment