Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMZ68_RS01580 Genome accession   NZ_CP180522
Coordinates   327290..328516 (-) Length   408 a.a.
NCBI ID   WP_342370950.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP5091     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 322290..333516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMZ68_RS01550 (ACMZ68_01550) - 322320..323630 (+) 1311 WP_415871634.1 tetratricopeptide repeat protein -
  ACMZ68_RS01555 (ACMZ68_01555) - 323707..324033 (+) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  ACMZ68_RS01560 (ACMZ68_01560) rlmB 324136..324885 (+) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACMZ68_RS01565 (ACMZ68_01565) - 324921..325835 (+) 915 WP_032038060.1 DMT family transporter -
  ACMZ68_RS01570 (ACMZ68_01570) coaE 325832..326428 (-) 597 WP_002115011.1 dephospho-CoA kinase -
  ACMZ68_RS01575 (ACMZ68_01575) pilD 326430..327290 (-) 861 WP_415871635.1 prepilin peptidase Machinery gene
  ACMZ68_RS01580 (ACMZ68_01580) pilC 327290..328516 (-) 1227 WP_342370950.1 type II secretion system F family protein Machinery gene
  ACMZ68_RS01585 (ACMZ68_01585) pilB 328543..330255 (-) 1713 WP_415871636.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMZ68_RS01590 (ACMZ68_01590) tpiA 330547..331341 (+) 795 WP_206261281.1 triose-phosphate isomerase -
  ACMZ68_RS01595 (ACMZ68_01595) secG 331354..331683 (+) 330 WP_002115012.1 preprotein translocase subunit SecG -
  ACMZ68_RS01615 (ACMZ68_01615) rimP 332321..332845 (+) 525 WP_002114922.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45135.53 Da        Isoelectric Point: 9.8207

>NTDB_id=1096173 ACMZ68_RS01580 WP_342370950.1 327290..328516(-) (pilC) [Acinetobacter pittii strain AP5091]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFILIFVIGTIIA
TFLEAKKRSKKFRDGLDKFALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAAATNNIIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1096173 ACMZ68_RS01580 WP_342370950.1 327290..328516(-) (pilC) [Acinetobacter pittii strain AP5091]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGCGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGTGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAGAATATTCTTGAAGGTTTATTTAAGAAAAAAGTATCAACGCTCGATATCACGATTTTTACTAGGCAACTTGCAACC
ATGATGAAAGCCGGTGTCCCACTGGTACAAGGCTTTGAAATTGTAGCGGAGGGTCTGGAAAACCCAGCCATGCGCGAGGT
GGTACTCGGGATTAAAGGTGAAGTTGAAGGTGGTAGTACCTTTGCTTCAGCTTTAAGGAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGCGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTTAAGCAGAAAATTAAGAAAGCTATGAAATATCCAGCAACGGTCATCGTGGTTGCTGTGGTTGT
TACTATTATTTTGATGGTTAAAGTAGTGCCTGTTTTCCAAGACCTGTTTTCTTCTTTTGGTGCAGATTTACCGGCATTCA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATATTGGTTTATTCTGATTTTTGTGATTGGGACAATCATTGCC
ACATTTCTGGAAGCTAAAAAGCGTAGTAAAAAATTCCGTGATGGTTTAGACAAATTTGCCCTAAAACTACCTATCTTTGG
TGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCGCTCATCG
ATGCGCTTGAATCAACTGCTGCTGCAACCAACAATATCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTTGCT
ACAGGCCAACAACTCCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCAACGTACTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATTATGGCAATTTTAGGAGTACTCGTAGGCGGTCTAGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

96.324

100

0.963
  pilC Acinetobacter baylyi ADP1

85.294

100

0.853
  pilC Pseudomonas stutzeri DSM 10701

58.765

99.265

0.583
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria meningitidis 44/76-A

45.98

97.549

0.449
  pilG Neisseria gonorrhoeae MS11

45.98

97.549

0.449
  pilC Vibrio cholerae strain A1552

41.422

100

0.414
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

35.922

100

0.363

Multiple sequence alignment