Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACMVYK_RS04940 Genome accession   NZ_CP180313
Coordinates   1043916..1044233 (-) Length   105 a.a.
NCBI ID   WP_001831271.1    Uniprot ID   A0A9Q5JKE9
Organism   Staphylococcus epidermidis strain YSMAS1_1_E3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1038916..1049233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVYK_RS04910 (ACMVYK_04910) gcvPA 1039442..1040788 (-) 1347 WP_049392315.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ACMVYK_RS04915 (ACMVYK_04915) gcvT 1040808..1041899 (-) 1092 WP_049392313.1 glycine cleavage system aminomethyltransferase GcvT -
  ACMVYK_RS04920 (ACMVYK_04920) - 1042117..1042629 (-) 513 WP_002485736.1 shikimate kinase -
  ACMVYK_RS04925 (ACMVYK_04925) - 1042794..1043285 (-) 492 WP_002440043.1 competence type IV pilus minor pilin ComGF -
  ACMVYK_RS04930 (ACMVYK_04930) - 1043209..1043502 (-) 294 WP_001831116.1 hypothetical protein -
  ACMVYK_RS04935 (ACMVYK_04935) comGD 1043489..1043926 (-) 438 WP_001831025.1 competence type IV pilus minor pilin ComGD -
  ACMVYK_RS04940 (ACMVYK_04940) comGC 1043916..1044233 (-) 318 WP_001831271.1 competence type IV pilus major pilin ComGC Machinery gene
  ACMVYK_RS04945 (ACMVYK_04945) comGB 1044251..1045318 (-) 1068 WP_001831131.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACMVYK_RS04950 (ACMVYK_04950) comGA 1045290..1046264 (-) 975 WP_001831109.1 competence type IV pilus ATPase ComGA Machinery gene
  ACMVYK_RS04955 (ACMVYK_04955) - 1046321..1046944 (-) 624 WP_001831016.1 MBL fold metallo-hydrolase -
  ACMVYK_RS04960 (ACMVYK_04960) - 1046944..1047270 (-) 327 WP_001831234.1 MTH1187 family thiamine-binding protein -
  ACMVYK_RS04965 (ACMVYK_04965) - 1047270..1048256 (-) 987 WP_001831113.1 ROK family glucokinase -
  ACMVYK_RS04970 (ACMVYK_04970) - 1048256..1048456 (-) 201 WP_001831138.1 YqgQ family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11491.58 Da        Isoelectric Point: 9.7429

>NTDB_id=1095186 ACMVYK_RS04940 WP_001831271.1 1043916..1044233(-) (comGC) [Staphylococcus epidermidis strain YSMAS1_1_E3]
MKTLKLLKKTRAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQSTGCDAQVKMVNSQIEAYALKHNRNPSNIDDLVSDG
FIKEGQKTCKSGQTISIANGEAVAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=1095186 ACMVYK_RS04940 WP_001831271.1 1043916..1044233(-) (comGC) [Staphylococcus epidermidis strain YSMAS1_1_E3]
ATGAAAACATTGAAATTATTGAAAAAAACACGAGCATTTACCTTGATAGAAATGCTTTTAGTATTACTAATAATAAGTTT
ATTGTTAATACTTATAATTCCAAATATTGCAAAACAAACATCTCATATTCAGTCAACTGGATGTGATGCTCAAGTTAAAA
TGGTAAACAGTCAAATAGAAGCCTACGCTTTAAAACATAATCGCAACCCTTCTAATATTGATGATTTGGTTTCAGATGGT
TTTATAAAAGAAGGACAAAAAACATGTAAATCCGGTCAGACAATTAGTATTGCAAATGGAGAAGCAGTTGCCAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

87.255

97.143

0.848
  comGC Staphylococcus aureus N315

87.255

97.143

0.848
  comGC/cglC Streptococcus mitis SK321

44.66

98.095

0.438
  comGC/cglC Streptococcus pneumoniae TIGR4

44.681

89.524

0.4
  comGC/cglC Streptococcus pneumoniae Rx1

44.681

89.524

0.4
  comGC/cglC Streptococcus pneumoniae D39

44.681

89.524

0.4
  comGC/cglC Streptococcus pneumoniae R6

44.681

89.524

0.4
  comYC Streptococcus mutans UA159

47.674

81.905

0.39
  comYC Streptococcus mutans UA140

47.674

81.905

0.39
  comYC Streptococcus gordonii str. Challis substr. CH1

46.512

81.905

0.381
  comGC Lactococcus lactis subsp. cremoris KW2

47.561

78.095

0.371
  comGC/cglC Streptococcus mitis NCTC 12261

50

74.286

0.371
  comYC Streptococcus suis isolate S10

48.718

74.286

0.362
  comGC Bacillus subtilis subsp. subtilis str. 168

41.758

86.667

0.362

Multiple sequence alignment