Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | ACMUKF_RS06100 | Genome accession | NZ_CP180176 |
| Coordinates | 1273461..1273778 (+) | Length | 105 a.a. |
| NCBI ID | WP_001831271.1 | Uniprot ID | A0A9Q5JKE9 |
| Organism | Staphylococcus epidermidis strain 1457_SeCI_SE48 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1268461..1278778
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMUKF_RS06070 (ACMUKF_06070) | - | 1269238..1269438 (+) | 201 | WP_001831138.1 | YqgQ family protein | - |
| ACMUKF_RS06075 (ACMUKF_06075) | - | 1269438..1270424 (+) | 987 | WP_001831113.1 | ROK family glucokinase | - |
| ACMUKF_RS06080 (ACMUKF_06080) | - | 1270424..1270750 (+) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| ACMUKF_RS06085 (ACMUKF_06085) | - | 1270750..1271373 (+) | 624 | WP_001831016.1 | MBL fold metallo-hydrolase | - |
| ACMUKF_RS06090 (ACMUKF_06090) | comGA | 1271430..1272404 (+) | 975 | WP_001831109.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACMUKF_RS06095 (ACMUKF_06095) | comGB | 1272376..1273443 (+) | 1068 | WP_001831131.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACMUKF_RS06100 (ACMUKF_06100) | comGC | 1273461..1273778 (+) | 318 | WP_001831271.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACMUKF_RS06105 (ACMUKF_06105) | comGD | 1273768..1274205 (+) | 438 | WP_001831025.1 | competence type IV pilus minor pilin ComGD | - |
| ACMUKF_RS06110 (ACMUKF_06110) | - | 1274192..1274485 (+) | 294 | WP_001831116.1 | hypothetical protein | - |
| ACMUKF_RS06115 (ACMUKF_06115) | - | 1274409..1274900 (+) | 492 | WP_002440043.1 | competence type IV pilus minor pilin ComGF | - |
| ACMUKF_RS06120 (ACMUKF_06120) | - | 1275065..1275577 (+) | 513 | WP_002440040.1 | shikimate kinase | - |
| ACMUKF_RS06125 (ACMUKF_06125) | gcvT | 1275795..1276886 (+) | 1092 | WP_001831107.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ACMUKF_RS06130 (ACMUKF_06130) | gcvPA | 1276906..1278252 (+) | 1347 | WP_032606400.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11491.58 Da Isoelectric Point: 9.7429
>NTDB_id=1094261 ACMUKF_RS06100 WP_001831271.1 1273461..1273778(+) (comGC) [Staphylococcus epidermidis strain 1457_SeCI_SE48]
MKTLKLLKKTRAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQSTGCDAQVKMVNSQIEAYALKHNRNPSNIDDLVSDG
FIKEGQKTCKSGQTISIANGEAVAN
MKTLKLLKKTRAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQSTGCDAQVKMVNSQIEAYALKHNRNPSNIDDLVSDG
FIKEGQKTCKSGQTISIANGEAVAN
Nucleotide
Download Length: 318 bp
>NTDB_id=1094261 ACMUKF_RS06100 WP_001831271.1 1273461..1273778(+) (comGC) [Staphylococcus epidermidis strain 1457_SeCI_SE48]
ATGAAAACATTGAAATTATTGAAAAAAACACGAGCATTTACCTTGATAGAAATGCTTTTAGTATTACTAATAATAAGTTT
ATTGTTAATACTTATAATTCCAAATATTGCAAAACAAACATCTCATATTCAGTCAACTGGATGTGATGCTCAAGTTAAAA
TGGTAAACAGTCAAATAGAAGCCTACGCTTTAAAACATAATCGCAACCCTTCTAATATTGATGATTTGGTTTCAGATGGT
TTTATAAAAGAAGGACAAAAAACATGTAAATCCGGTCAGACAATTAGTATTGCAAATGGAGAAGCAGTTGCCAATTAA
ATGAAAACATTGAAATTATTGAAAAAAACACGAGCATTTACCTTGATAGAAATGCTTTTAGTATTACTAATAATAAGTTT
ATTGTTAATACTTATAATTCCAAATATTGCAAAACAAACATCTCATATTCAGTCAACTGGATGTGATGCTCAAGTTAAAA
TGGTAAACAGTCAAATAGAAGCCTACGCTTTAAAACATAATCGCAACCCTTCTAATATTGATGATTTGGTTTCAGATGGT
TTTATAAAAGAAGGACAAAAAACATGTAAATCCGGTCAGACAATTAGTATTGCAAATGGAGAAGCAGTTGCCAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
87.255 |
97.143 |
0.848 |
| comGC | Staphylococcus aureus N315 |
87.255 |
97.143 |
0.848 |
| comGC/cglC | Streptococcus mitis SK321 |
44.66 |
98.095 |
0.438 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae D39 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae R6 |
44.681 |
89.524 |
0.4 |
| comYC | Streptococcus mutans UA159 |
47.674 |
81.905 |
0.39 |
| comYC | Streptococcus mutans UA140 |
47.674 |
81.905 |
0.39 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
46.512 |
81.905 |
0.381 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
47.561 |
78.095 |
0.371 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
50 |
74.286 |
0.371 |
| comYC | Streptococcus suis isolate S10 |
48.718 |
74.286 |
0.362 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.758 |
86.667 |
0.362 |