Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMG4N_RS15055 Genome accession   NZ_CP179932
Coordinates   3277097..3278323 (+) Length   408 a.a.
NCBI ID   WP_414432267.1    Uniprot ID   -
Organism   Alcanivorax sp. IL2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3272097..3283323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMG4N_RS15040 (ACMG4N_15040) nadC 3273344..3274186 (+) 843 WP_297767101.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACMG4N_RS15045 (ACMG4N_15045) - 3274455..3274931 (-) 477 WP_297767103.1 pilin -
  ACMG4N_RS15050 (ACMG4N_15050) pilB 3275385..3277094 (+) 1710 WP_297767104.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMG4N_RS15055 (ACMG4N_15055) pilC 3277097..3278323 (+) 1227 WP_414432267.1 type II secretion system F family protein Machinery gene
  ACMG4N_RS15060 (ACMG4N_15060) pilD 3278327..3279205 (+) 879 WP_414432269.1 prepilin peptidase Machinery gene
  ACMG4N_RS15065 (ACMG4N_15065) coaE 3279324..3279923 (+) 600 WP_297767110.1 dephospho-CoA kinase -
  ACMG4N_RS15070 (ACMG4N_15070) - 3279926..3280117 (+) 192 WP_035249304.1 DNA gyrase inhibitor YacG -
  ACMG4N_RS15075 (ACMG4N_15075) - 3280247..3281203 (-) 957 WP_414432271.1 Nudix family hydrolase -
  ACMG4N_RS15080 (ACMG4N_15080) argJ 3281343..3282545 (-) 1203 WP_414432273.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44264.05 Da        Isoelectric Point: 9.0685

>NTDB_id=1093965 ACMG4N_RS15055 WP_414432267.1 3277097..3278323(+) (pilC) [Alcanivorax sp. IL2]
MATKTAAQQSVTFTYEGVDRKGTKVKGEAAGKTPAMVRAELRKQGINAKKVVKKRELRFGGKKKIKPLDIALFTRQMATM
MKAGVPLVQAFEIVADGLDNPSMKDLVLKLKVDVEGGNNFAGALSKHPDYFDDLYCSLIDAGEQSGALETMLDRVALYKE
KSEALKQKIKKAMKYPATVVVAAVIVTAILLLKVVPVFEDLFHGFGAELPAFTQFVISLSESLQENFFFIVIFLIAFSAI
FVQLKKRSEAFRNSLDRLVLKLPIVGDLAFKSTIARYARTLSTTFAAGVPLIDALDACAGATGNVVYRNAVIQVKEDVST
GQQLQFAMRSTGVFPAMALQMTAIGEESGALDAMLEKVAIYYEDEVDNAVDGLTSMMEPLIMSVLGVVIGGLIIAMYLPI
FQMGAVVG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1093965 ACMG4N_RS15055 WP_414432267.1 3277097..3278323(+) (pilC) [Alcanivorax sp. IL2]
ATGGCAACTAAAACAGCAGCACAACAAAGTGTCACTTTTACTTATGAAGGGGTGGATCGTAAAGGGACCAAAGTCAAAGG
GGAAGCCGCCGGGAAAACTCCCGCCATGGTTCGTGCAGAGCTGCGCAAGCAAGGCATCAACGCCAAGAAAGTAGTAAAAA
AACGAGAACTTCGTTTCGGTGGCAAAAAGAAAATCAAGCCTCTCGACATAGCACTTTTTACTCGTCAAATGGCCACCATG
ATGAAAGCCGGTGTCCCTTTGGTCCAGGCCTTTGAGATCGTTGCCGATGGGCTCGACAACCCCAGCATGAAGGACCTGGT
CCTCAAATTAAAAGTAGATGTAGAAGGCGGCAACAATTTTGCTGGCGCTCTATCAAAACATCCAGACTACTTTGACGACC
TCTATTGCAGCCTGATTGATGCAGGCGAACAATCAGGCGCGCTGGAAACCATGCTGGACAGAGTTGCTCTCTATAAGGAA
AAGAGCGAAGCCCTAAAACAAAAAATCAAGAAAGCAATGAAATATCCAGCAACCGTTGTAGTTGCCGCTGTAATTGTGAC
TGCAATTTTGCTGCTTAAAGTCGTTCCGGTTTTTGAAGATCTCTTCCATGGTTTTGGCGCAGAGCTGCCCGCATTCACTC
AATTTGTTATATCGTTATCCGAATCGCTTCAGGAAAACTTCTTTTTTATCGTGATTTTCCTCATAGCCTTTTCCGCTATT
TTTGTTCAGTTAAAAAAGCGCTCTGAAGCATTTAGAAATAGCCTGGACAGGCTGGTATTAAAACTCCCCATCGTTGGAGA
CCTGGCATTCAAATCCACCATTGCCAGGTATGCCCGCACCCTCTCCACCACCTTTGCAGCCGGCGTACCTTTGATTGATG
CTCTCGACGCTTGTGCTGGCGCAACAGGCAATGTGGTATACCGCAATGCAGTAATACAGGTGAAAGAGGATGTCTCTACG
GGTCAGCAGCTCCAATTTGCGATGCGCAGCACCGGCGTTTTTCCTGCCATGGCTTTGCAAATGACAGCGATTGGCGAAGA
ATCTGGCGCGCTTGATGCGATGCTTGAGAAGGTGGCCATTTACTACGAAGATGAAGTTGATAATGCTGTGGACGGCTTAA
CCAGCATGATGGAACCACTAATCATGAGTGTCTTGGGGGTTGTTATTGGTGGCTTGATCATCGCCATGTATCTTCCTATC
TTCCAAATGGGCGCAGTTGTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)

Type II secretion system (T2SS), protein F (T2SSF)

(278-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

66.585

99.755

0.664
  pilC Acinetobacter baumannii D1279779

66.015

100

0.662
  pilC Acinetobacter baylyi ADP1

68.01

97.304

0.662
  pilC Legionella pneumophila strain ERS1305867

53.266

97.549

0.52
  pilG Neisseria meningitidis 44/76-A

44.417

98.775

0.439
  pilG Neisseria gonorrhoeae MS11

44.417

98.775

0.439
  pilC Vibrio campbellii strain DS40M4

42.752

99.755

0.426
  pilC Vibrio cholerae strain A1552

42.356

97.794

0.414
  pilC Thermus thermophilus HB27

36.935

97.549

0.36

Multiple sequence alignment