Detailed information NTG1093225

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ACK8DA_RS17490
• Genome accession: NZ_CP179869
• Coordinates: 3648607..3649044 (-)
• Length: 145 a.a.
• NCBI ID: WP_000993715.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain MRSN122172
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	3647429..3648439	3648607..3649044	flank	168

Gene organization within MGE regions

Location: 3647429..3649044

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK8DA_RS17485 (ACK8DA_17485)	-	3647429..3648397 (-)	969	WP_012308653.1	IS30 family transposase	-
ACK8DA_RS17490 (ACK8DA_17490)	pilA	3648607..3649044 (-)	438	WP_000993715.1	pilin	Machinery gene

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 15022.14 Da
• Isoelectric Point: 8.1097

>NTDB_id=1093225 ACK8DA_RS17490 WP_000993715.1 3648607..3649044(-) (pilA) [Acinetobacter baumannii strain MRSN122172]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQVSTGLADITAGKTNAETKLAEGLTAALTDVEALGLQKSTNAC
STITTSIGTNGASNITCTLKGTSQINSKKIEWIRDADNATNGTTGAWRCKTDVAENLRPKSCGAS

Nucleotide

• Length: 438 bp

>NTDB_id=1093225 ACK8DA_RS17490 WP_000993715.1 3648607..3649044(-) (pilA) [Acinetobacter baumannii strain MRSN122172]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTAGTTGCCATTATTGGTATTTTGGCTGCGATTGCGAT
TCCTGCTTATCAAAACTACATTGCTAAGTCACAAGTAAGTACTGGTTTAGCTGATATTACTGCTGGTAAGACAAACGCAG
AAACTAAATTAGCAGAAGGTTTAACTGCGGCATTAACTGATGTAGAAGCTTTAGGCTTACAAAAATCTACGAATGCTTGT
AGTACTATTACAACCAGTATCGGAACTAATGGTGCAAGTAATATTACTTGTACATTGAAAGGTACATCACAAATTAATAG
TAAAAAAATTGAATGGATCCGTGATGCAGATAATGCTACAAATGGTACGACAGGTGCTTGGCGCTGTAAAACTGATGTAG
CTGAAAACTTACGTCCTAAATCATGTGGTGCTTCTTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-26)

• Pilin (bacterial filament) (Pilin) (35-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Acinetobacter baumannii strain A118	52.414	100	0.524
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	44.218	100	0.448
pilA	Vibrio cholerae strain A1552	44.218	100	0.448
pilA	Vibrio cholerae C6706	44.218	100	0.448
pilA	Pseudomonas aeruginosa PAK	41.558	100	0.441
pilA/pilAI	Pseudomonas stutzeri DSM 10701	43.357	98.621	0.428
comP	Acinetobacter baylyi ADP1	40	100	0.414
pilA	Haemophilus influenzae 86-028NP	38.816	100	0.407
pilA/pilAII	Pseudomonas stutzeri DSM 10701	40.845	97.931	0.4
pilA	Vibrio parahaemolyticus RIMD 2210633	43.651	86.897	0.379