Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACJQW4_RS03675 Genome accession   NZ_CP178606
Coordinates   789248..790474 (+) Length   408 a.a.
NCBI ID   WP_241628721.1    Uniprot ID   -
Organism   Acinetobacter sp. A7.4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 784248..795474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJQW4_RS03635 (ACJQW4_03635) rimP 784796..785320 (-) 525 WP_241628338.1 ribosome maturation factor RimP -
  ACJQW4_RS03660 (ACJQW4_03660) secG 786103..786432 (-) 330 WP_100242739.1 preprotein translocase subunit SecG -
  ACJQW4_RS03665 (ACJQW4_03665) tpiA 786446..787237 (-) 792 WP_241628717.1 triose-phosphate isomerase -
  ACJQW4_RS03670 (ACJQW4_03670) pilB 787516..789219 (+) 1704 WP_241628719.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACJQW4_RS03675 (ACJQW4_03675) pilC 789248..790474 (+) 1227 WP_241628721.1 type II secretion system F family protein Machinery gene
  ACJQW4_RS03680 (ACJQW4_03680) pilD 790474..791334 (+) 861 WP_241628723.1 prepilin peptidase Machinery gene
  ACJQW4_RS03685 (ACJQW4_03685) coaE 791337..791954 (+) 618 WP_241628725.1 dephospho-CoA kinase -
  ACJQW4_RS03690 (ACJQW4_03690) - 791951..792865 (-) 915 WP_413351718.1 DMT family transporter -
  ACJQW4_RS03695 (ACJQW4_03695) rlmB 792901..793653 (-) 753 WP_241628729.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACJQW4_RS03700 (ACJQW4_03700) - 793790..794113 (-) 324 WP_016168405.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44947.44 Da        Isoelectric Point: 9.8881

>NTDB_id=1090389 ACJQW4_RS03675 WP_241628721.1 789248..790474(+) (pilC) [Acinetobacter sp. A7.4]
MAVKKAQMMPTFSYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKTIREKRKNILDGLMKKRVTTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIIVTIILMVKVVPVFQDLFTSFGADLPAFTKMVVNMSEWMQKYWFILIIAIGIAIA
AFLEAKKRSKKFRDFLDKAALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEQAVLKIREDVA
TGQQLQFAMRVTDKFPAMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1090389 ACJQW4_RS03675 WP_241628721.1 789248..790474(+) (pilC) [Acinetobacter sp. A7.4]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAGTTATGAAGGGGTTGACCGCAAAGGGGCTAAAATTAAGGGGGA
GTTACCTGCTCGCAATATGGCTCTAGCAAAAGTCACATTACGCAAGCAGGGTGTAACGATTAAGACCATTCGGGAAAAAC
GTAAAAACATCCTCGATGGTTTAATGAAGAAACGCGTGACGACTCTTGATATCACCATTTTTACTCGCCAATTGGCAACC
ATGATGAAAGCTGGTGTACCACTAGTACAAAGCTTTGAAATTGTCGCGGAAGGTTTAGAAAACCCAGCCATGCGTGAAGT
CGTTTTAGGTATCAAAGGTGAAGTCGAAGGTGGTAATACCTTTGCGGGTGCCTTACGCAAATATCCTCAGTATTTTGACA
ACCTATTTTGCTCTTTGGTTGAATCAGGTGAACAATCTGGTGCACTTGAAACCATGCTAGATCGTGTCGCCATCTATAAA
GAAAAAAGCGAACTTCTGAAGCAGAAAATCAAAAAAGCCATGAAATATCCAGCCACAGTAATTGTAGTAGCGATTATTGT
GACCATTATTTTGATGGTGAAAGTCGTTCCCGTCTTTCAGGATTTATTTACTTCCTTTGGTGCGGATCTTCCAGCTTTCA
CCAAAATGGTAGTGAATATGTCGGAATGGATGCAAAAGTACTGGTTTATTCTGATTATTGCGATTGGTATTGCAATTGCT
GCTTTCCTTGAAGCAAAAAAACGCAGTAAGAAATTCCGTGATTTTCTGGATAAAGCTGCATTAAAACTTCCCATCTTTGG
CGATCTTGTTTATAAAGCCATTATTGCCCGCTATAGCCGAACTTTAGCCACAACCTTTGCAGCAGGTGTGCCCTTAATTG
ATGCTTTGGAATCAACTGCAGGTGCCACCAATAACGTGGTCTATGAACAAGCTGTGCTCAAGATCCGAGAAGATGTCGCA
ACTGGTCAACAGCTGCAATTCGCCATGCGCGTCACCGATAAATTCCCTGCGATGGCAGTCCAAATGGTCGCTATTGGTGA
AGAATCAGGTGCACTGGACGCCATGTTGGATAAAGTGGCAACGCACTACGAGAATGAAGTCGATAATGCCGTAGATGGTT
TAACTTCAATGATGGAGCCATTAATTATGGCTATTCTTGGTGTCCTTGTCGGTGGTCTGGTCATTGCAATGTATCTCCCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

91.667

100

0.917
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

60.988

99.265

0.605
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria meningitidis 44/76-A

46.867

97.794

0.458
  pilG Neisseria gonorrhoeae MS11

46.867

97.794

0.458
  pilC Vibrio cholerae strain A1552

42.892

100

0.429
  pilC Vibrio campbellii strain DS40M4

41.523

99.755

0.414
  pilC Thermus thermophilus HB27

37.284

99.265

0.37

Multiple sequence alignment