Detailed information NTG1090390

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACJQW4_RS03680
• Genome accession: NZ_CP178606
• Coordinates: 790474..791334 (+)
• Length: 286 a.a.
• NCBI ID: WP_241628723.1
• Uniprot ID: -
• Organism: Acinetobacter sp. A7.4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 785474..796334

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJQW4_RS03660 (ACJQW4_03660)	secG	786103..786432 (-)	330	WP_100242739.1	preprotein translocase subunit SecG	-
ACJQW4_RS03665 (ACJQW4_03665)	tpiA	786446..787237 (-)	792	WP_241628717.1	triose-phosphate isomerase	-
ACJQW4_RS03670 (ACJQW4_03670)	pilB	787516..789219 (+)	1704	WP_241628719.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACJQW4_RS03675 (ACJQW4_03675)	pilC	789248..790474 (+)	1227	WP_241628721.1	type II secretion system F family protein	Machinery gene
ACJQW4_RS03680 (ACJQW4_03680)	pilD	790474..791334 (+)	861	WP_241628723.1	prepilin peptidase	Machinery gene
ACJQW4_RS03685 (ACJQW4_03685)	coaE	791337..791954 (+)	618	WP_241628725.1	dephospho-CoA kinase	-
ACJQW4_RS03690 (ACJQW4_03690)	-	791951..792865 (-)	915	WP_413351718.1	DMT family transporter	-
ACJQW4_RS03695 (ACJQW4_03695)	rlmB	792901..793653 (-)	753	WP_241628729.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ACJQW4_RS03700 (ACJQW4_03700)	-	793790..794113 (-)	324	WP_016168405.1	pyrimidine/purine nucleoside phosphorylase	-
ACJQW4_RS03705 (ACJQW4_03705)	recN	794445..796112 (+)	1668	WP_241628730.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32085.48 Da
• Isoelectric Point: 7.8044

>NTDB_id=1090390 ACJQW4_RS03680 WP_241628723.1 790474..791334(+) (pilD) [Acinetobacter sp. A7.4]
MQDLINIFIQNPTALYMAVGIFSLCIGSFLNVVIYRTPKMMEQEWRQDCQLLLHPEQAMIDEEKLSLSRPASTCPKCKTP
IHWYQNIPVISWLVLRGKCGNCNNPISIRYPLVELLTAICALIVVAIYGPTLQMLFGLILTYTLIALTFIDFDTQLLPDR
YTLPLAALGLGINSYAIYTSPTTAIWGYIIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=1090390 ACJQW4_RS03680 WP_241628723.1 790474..791334(+) (pilD) [Acinetobacter sp. A7.4]
ATGCAAGATTTAATCAATATTTTTATTCAAAACCCAACTGCGCTTTACATGGCAGTTGGGATTTTTAGTTTATGCATCGG
TAGTTTTTTGAATGTTGTGATCTACCGCACCCCTAAAATGATGGAACAAGAATGGCGCCAAGATTGCCAATTATTGCTAC
ATCCAGAACAAGCGATGATTGATGAAGAGAAACTTAGTTTAAGTCGGCCTGCATCCACCTGCCCCAAATGTAAGACCCCA
ATCCATTGGTATCAGAATATTCCTGTCATTAGTTGGCTAGTATTACGCGGTAAGTGCGGAAATTGTAACAACCCGATTAG
CATTCGCTACCCTTTGGTTGAGTTACTGACTGCGATTTGCGCCTTAATAGTTGTGGCAATCTATGGTCCAACTCTTCAGA
TGTTGTTTGGTTTAATCTTGACCTACACCTTGATTGCACTGACTTTTATCGACTTCGATACCCAGCTTTTACCTGATCGC
TATACCCTACCGCTTGCAGCCTTAGGACTTGGTATTAATAGCTATGCAATTTACACCTCTCCTACAACTGCTATCTGGGG
CTATATCATTGGCTTTCTTTGCCTTTGGATTGTGTATTACCTGTTTAAAATCATTACAGGTAAAGAAGGCATGGGCTACG
GTGACTTTAAATTACTGGCTGCTTTAGGTGCCTGGATGGGTCCCTTAATGCTACCCTTGATCGTACTACTATCGTCATTG
GTAGGTGCAATTATCGGCATCATCCTTTTAAAAGTGCGTAAAGAAAACCAGCCATTTGCTTTTGGTCCCTATATTGCGAT
TGCAGGCTGGATTGCCTTTTTATGGGGTGAGCAAATCATGAAAGTTTATCTGGGACAATAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	80.351	99.65	0.801
pilD	Acinetobacter baumannii D1279779	80.351	99.65	0.801
pilD	Vibrio campbellii strain DS40M4	50.883	98.951	0.503
pilD	Vibrio cholerae strain A1552	52.809	93.357	0.493
pilD	Neisseria gonorrhoeae MS11	44.928	96.503	0.434