Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACLMBL_RS06160 | Genome accession | NZ_CP178536 |
| Coordinates | 1197953..1198378 (+) | Length | 141 a.a. |
| NCBI ID | WP_117346059.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain T144 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1192953..1203378
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLMBL_RS06090 (ACLMBL_06090) | - | 1193212..1193526 (-) | 315 | WP_000333630.1 | helix-turn-helix domain-containing protein | - |
| ACLMBL_RS06095 (ACLMBL_06095) | - | 1193678..1193914 (+) | 237 | WP_001121027.1 | helix-turn-helix domain-containing protein | - |
| ACLMBL_RS06100 (ACLMBL_06100) | - | 1193928..1194704 (+) | 777 | WP_001148544.1 | Rha family transcriptional regulator | - |
| ACLMBL_RS06105 (ACLMBL_06105) | - | 1194733..1194876 (+) | 144 | WP_000939498.1 | hypothetical protein | - |
| ACLMBL_RS06110 (ACLMBL_06110) | - | 1194866..1195075 (-) | 210 | WP_000642492.1 | hypothetical protein | - |
| ACLMBL_RS06115 (ACLMBL_06115) | - | 1195131..1195376 (+) | 246 | WP_001025401.1 | DUF2829 domain-containing protein | - |
| ACLMBL_RS06120 (ACLMBL_06120) | - | 1195345..1195710 (-) | 366 | WP_001128433.1 | hypothetical protein | - |
| ACLMBL_RS06125 (ACLMBL_06125) | - | 1195765..1195980 (+) | 216 | WP_001097552.1 | hypothetical protein | - |
| ACLMBL_RS06130 (ACLMBL_06130) | - | 1196007..1196270 (+) | 264 | WP_001124196.1 | helix-turn-helix domain-containing protein | - |
| ACLMBL_RS06135 (ACLMBL_06135) | - | 1196283..1196444 (+) | 162 | WP_001285948.1 | DUF1270 domain-containing protein | - |
| ACLMBL_RS06140 (ACLMBL_06140) | - | 1196539..1196841 (+) | 303 | WP_001608484.1 | DUF2482 family protein | - |
| ACLMBL_RS06145 (ACLMBL_06145) | - | 1196846..1197106 (+) | 261 | WP_031584888.1 | DUF1108 family protein | - |
| ACLMBL_RS06150 (ACLMBL_06150) | - | 1197116..1197337 (+) | 222 | WP_000815401.1 | DUF2483 family protein | - |
| ACLMBL_RS06155 (ACLMBL_06155) | - | 1197330..1197953 (+) | 624 | WP_047554413.1 | DUF1071 domain-containing protein | - |
| ACLMBL_RS06160 (ACLMBL_06160) | ssb | 1197953..1198378 (+) | 426 | WP_117346059.1 | single-stranded DNA-binding protein | Machinery gene |
| ACLMBL_RS06165 (ACLMBL_06165) | - | 1198389..1198940 (+) | 552 | WP_001004506.1 | NUMOD4 domain-containing protein | - |
| ACLMBL_RS06170 (ACLMBL_06170) | - | 1198941..1199615 (+) | 675 | WP_117346060.1 | putative HNHc nuclease | - |
| ACLMBL_RS06175 (ACLMBL_06175) | - | 1199608..1200360 (+) | 753 | WP_031584871.1 | DnaD domain protein | - |
| ACLMBL_RS06180 (ACLMBL_06180) | - | 1200360..1200716 (+) | 357 | WP_001132247.1 | hypothetical protein | - |
| ACLMBL_RS06185 (ACLMBL_06185) | - | 1200713..1201954 (+) | 1242 | WP_001106171.1 | DnaB helicase C-terminal domain-containing protein | - |
| ACLMBL_RS06190 (ACLMBL_06190) | - | 1201951..1202166 (+) | 216 | WP_031584864.1 | hypothetical protein | - |
| ACLMBL_RS06195 (ACLMBL_06195) | - | 1202169..1202390 (+) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| ACLMBL_RS06200 (ACLMBL_06200) | - | 1202400..1202807 (+) | 408 | WP_029549553.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ACLMBL_RS06205 (ACLMBL_06205) | - | 1202807..1202992 (+) | 186 | WP_117346061.1 | DUF3113 family protein | - |
| ACLMBL_RS06210 (ACLMBL_06210) | - | 1202993..1203355 (+) | 363 | WP_000536051.1 | SA1788 family PVL leukocidin-associated protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15893.56 Da Isoelectric Point: 8.4588
>NTDB_id=1089980 ACLMBL_RS06160 WP_117346059.1 1197953..1198378(+) (ssb) [Staphylococcus aureus strain T144]
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADNVQFLEPKNNNQQQNNNYQQQRQTQTGNNPFDNNADSIEDLPF
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADNVQFLEPKNNNQQQNNNYQQQRQTQTGNNPFDNNADSIEDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=1089980 ACLMBL_RS06160 WP_117346059.1 1197953..1198378(+) (ssb) [Staphylococcus aureus strain T144]
ATGTTAAACAGAACAGTATTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGTACGCCAAATGGCGTAAATGTAGG
GACGTTCACATTAGCGGTAAACAGAACATTTACGAATGCTCAAGGCGAGCGTGAAGCAGACTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGGTCACTGGCAGGCGTAGACGGACGACTACAAACAAGA
AGCTACGAAAACAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAATGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCAACAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
ATGTTAAACAGAACAGTATTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGTACGCCAAATGGCGTAAATGTAGG
GACGTTCACATTAGCGGTAAACAGAACATTTACGAATGCTCAAGGCGAGCGTGAAGCAGACTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGGTCACTGGCAGGCGTAGACGGACGACTACAAACAAGA
AGCTACGAAAACAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAATGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCAACAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.631 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
80.374 |
75.887 |
0.61 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
75.177 |
0.447 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.844 |
100 |
0.418 |
| ssbA | Streptococcus mutans UA159 |
41.135 |
100 |
0.411 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.915 |
83.688 |
0.376 |