Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | ACLSIV_RS10785 | Genome accession | NZ_CP178385 |
| Coordinates | 2162516..2162821 (-) | Length | 101 a.a. |
| NCBI ID | WP_174519819.1 | Uniprot ID | - |
| Organism | Lactococcus raffinolactis strain GCULR | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2157516..2167821
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLSIV_RS10745 (ACLSIV_10745) | - | 2158042..2158812 (-) | 771 | WP_244165990.1 | metal ABC transporter ATP-binding protein | - |
| ACLSIV_RS10750 (ACLSIV_10750) | - | 2158812..2159261 (-) | 450 | WP_096039675.1 | zinc-dependent MarR family transcriptional regulator | - |
| ACLSIV_RS10755 (ACLSIV_10755) | - | 2159337..2160185 (-) | 849 | WP_096039676.1 | aminotransferase class IV | - |
| ACLSIV_RS10760 (ACLSIV_10760) | ispE | 2160269..2161120 (-) | 852 | WP_061774322.1 | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase | - |
| ACLSIV_RS10765 (ACLSIV_10765) | comGG | 2161125..2161409 (-) | 285 | WP_096039677.1 | competence type IV pilus minor pilin ComGG | - |
| ACLSIV_RS10770 (ACLSIV_10770) | comGF | 2161421..2161864 (-) | 444 | WP_244165991.1 | competence type IV pilus minor pilin ComGF | - |
| ACLSIV_RS10775 (ACLSIV_10775) | comGE | 2161839..2162144 (-) | 306 | WP_082785376.1 | competence type IV pilus minor pilin ComGE | - |
| ACLSIV_RS10780 (ACLSIV_10780) | comGD | 2162116..2162601 (-) | 486 | WP_341865229.1 | competence type IV pilus minor pilin ComGD | - |
| ACLSIV_RS10785 (ACLSIV_10785) | comYC | 2162516..2162821 (-) | 306 | WP_174519819.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACLSIV_RS10790 (ACLSIV_10790) | comYB | 2162845..2163930 (-) | 1086 | WP_310592697.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACLSIV_RS10795 (ACLSIV_10795) | comGA/cglA/cilD | 2163812..2164753 (-) | 942 | WP_061774317.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACLSIV_RS10800 (ACLSIV_10800) | - | 2164816..2166660 (-) | 1845 | WP_096039681.1 | acyltransferase family protein | - |
| ACLSIV_RS10805 (ACLSIV_10805) | - | 2166657..2167019 (-) | 363 | WP_096039682.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 11338.21 Da Isoelectric Point: 9.9451
>NTDB_id=1089316 ACLSIV_RS10785 WP_174519819.1 2162516..2162821(-) (comYC) [Lactococcus raffinolactis strain GCULR]
MKKKIVRAFTLVEMLVVLLVISVLILLFIPNLSKQKETVKNTGNGAVVKVVNSQAELYRLDHTDDVTLGKLVSNGNITQK
QADAYNEYYKKNTTESREIPS
MKKKIVRAFTLVEMLVVLLVISVLILLFIPNLSKQKETVKNTGNGAVVKVVNSQAELYRLDHTDDVTLGKLVSNGNITQK
QADAYNEYYKKNTTESREIPS
Nucleotide
Download Length: 306 bp
>NTDB_id=1089316 ACLSIV_RS10785 WP_174519819.1 2162516..2162821(-) (comYC) [Lactococcus raffinolactis strain GCULR]
ATGAAGAAAAAAATAGTACGTGCTTTTACTTTAGTAGAAATGCTAGTTGTTCTTCTTGTCATTAGTGTCTTAATTTTATT
GTTTATCCCCAATCTATCCAAACAAAAAGAGACTGTTAAGAATACAGGAAACGGCGCTGTTGTAAAGGTAGTTAACTCGC
AAGCGGAACTTTATAGATTAGACCATACTGATGATGTTACCTTAGGCAAGCTAGTCAGCAATGGCAATATCACACAAAAA
CAGGCGGATGCTTATAATGAGTACTATAAGAAGAACACAACAGAATCACGTGAAATTCCAAGCTAG
ATGAAGAAAAAAATAGTACGTGCTTTTACTTTAGTAGAAATGCTAGTTGTTCTTCTTGTCATTAGTGTCTTAATTTTATT
GTTTATCCCCAATCTATCCAAACAAAAAGAGACTGTTAAGAATACAGGAAACGGCGCTGTTGTAAAGGTAGTTAACTCGC
AAGCGGAACTTTATAGATTAGACCATACTGATGATGTTACCTTAGGCAAGCTAGTCAGCAATGGCAATATCACACAAAAA
CAGGCGGATGCTTATAATGAGTACTATAAGAAGAACACAACAGAATCACGTGAAATTCCAAGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
66.337 |
100 |
0.663 |
| comGC/cglC | Streptococcus mitis SK321 |
63.636 |
98.02 |
0.624 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
62.887 |
96.04 |
0.604 |
| comYC | Streptococcus mutans UA140 |
61.616 |
98.02 |
0.604 |
| comYC | Streptococcus mutans UA159 |
61.616 |
98.02 |
0.604 |
| comGC/cglC | Streptococcus pneumoniae R6 |
60.606 |
98.02 |
0.594 |
| comGC/cglC | Streptococcus pneumoniae D39 |
60.606 |
98.02 |
0.594 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
60.606 |
98.02 |
0.594 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
60.606 |
98.02 |
0.594 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
58.333 |
95.05 |
0.554 |
| comYC | Streptococcus suis isolate S10 |
57.5 |
79.208 |
0.455 |
| comGC | Staphylococcus aureus N315 |
46.835 |
78.218 |
0.366 |
| comGC | Staphylococcus aureus MW2 |
46.835 |
78.218 |
0.366 |