Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACLH2T_RS06600 | Genome accession | NZ_CP177348 |
| Coordinates | 1320710..1321135 (-) | Length | 141 a.a. |
| NCBI ID | WP_347920878.1 | Uniprot ID | - |
| Organism | Pediococcus acidilactici strain GR-5 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1290086..1330445 | 1320710..1321135 | within | 0 |
Gene organization within MGE regions
Location: 1290086..1330445
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLH2T_RS06390 (ACLH2T_06390) | - | 1290086..1290328 (-) | 243 | WP_152688961.1 | hypothetical protein | - |
| ACLH2T_RS06395 (ACLH2T_06395) | - | 1290447..1290815 (-) | 369 | WP_347920918.1 | phage holin | - |
| ACLH2T_RS06400 (ACLH2T_06400) | - | 1290826..1291089 (-) | 264 | WP_347921501.1 | hemolysin XhlA family protein | - |
| ACLH2T_RS06405 (ACLH2T_06405) | - | 1291089..1292252 (-) | 1164 | WP_347920917.1 | GH25 family lysozyme | - |
| ACLH2T_RS06410 (ACLH2T_06410) | - | 1292264..1292623 (-) | 360 | WP_347920915.1 | hypothetical protein | - |
| ACLH2T_RS06415 (ACLH2T_06415) | - | 1292607..1292768 (-) | 162 | WP_347920913.1 | hypothetical protein | - |
| ACLH2T_RS06420 (ACLH2T_06420) | - | 1292772..1293011 (-) | 240 | WP_347920912.1 | hypothetical protein | - |
| ACLH2T_RS06425 (ACLH2T_06425) | - | 1293004..1295382 (-) | 2379 | WP_347920910.1 | phage tail protein | - |
| ACLH2T_RS06430 (ACLH2T_06430) | - | 1295369..1297744 (-) | 2376 | WP_347920908.1 | phage tail spike protein | - |
| ACLH2T_RS06435 (ACLH2T_06435) | - | 1297809..1299578 (-) | 1770 | WP_347920906.1 | phage distal tail protein | - |
| ACLH2T_RS06440 (ACLH2T_06440) | - | 1299642..1304321 (-) | 4680 | WP_347920904.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| ACLH2T_RS06445 (ACLH2T_06445) | - | 1304352..1304537 (-) | 186 | WP_159206364.1 | hypothetical protein | - |
| ACLH2T_RS06450 (ACLH2T_06450) | - | 1304582..1304956 (-) | 375 | WP_347920902.1 | phage tail assembly chaperone | - |
| ACLH2T_RS06455 (ACLH2T_06455) | - | 1305032..1305706 (-) | 675 | WP_347920901.1 | phage tail protein | - |
| ACLH2T_RS06460 (ACLH2T_06460) | - | 1305722..1306102 (-) | 381 | WP_347920899.1 | DUF806 family protein | - |
| ACLH2T_RS06465 (ACLH2T_06465) | - | 1306102..1306509 (-) | 408 | WP_347920897.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| ACLH2T_RS06470 (ACLH2T_06470) | - | 1306512..1306859 (-) | 348 | WP_152688957.1 | phage head closure protein | - |
| ACLH2T_RS06475 (ACLH2T_06475) | - | 1306849..1307181 (-) | 333 | WP_152688956.1 | head-tail connector protein | - |
| ACLH2T_RS06480 (ACLH2T_06480) | - | 1307254..1308486 (-) | 1233 | WP_347920896.1 | phage major capsid protein | - |
| ACLH2T_RS06485 (ACLH2T_06485) | - | 1308486..1309238 (-) | 753 | WP_347921499.1 | head maturation protease, ClpP-related | - |
| ACLH2T_RS06490 (ACLH2T_06490) | - | 1309216..1310409 (-) | 1194 | WP_347920894.1 | phage portal protein | - |
| ACLH2T_RS06495 (ACLH2T_06495) | - | 1310412..1310606 (-) | 195 | WP_278892882.1 | DUF1056 family protein | - |
| ACLH2T_RS06500 (ACLH2T_06500) | - | 1310596..1312494 (-) | 1899 | WP_347920892.1 | terminase large subunit | - |
| ACLH2T_RS06505 (ACLH2T_06505) | - | 1312497..1312955 (-) | 459 | WP_270515254.1 | phage terminase small subunit P27 family | - |
| ACLH2T_RS06510 (ACLH2T_06510) | - | 1313087..1313449 (-) | 363 | WP_347921497.1 | HNH endonuclease | - |
| ACLH2T_RS06515 (ACLH2T_06515) | - | 1313456..1313575 (-) | 120 | Protein_1261 | NUMOD4 domain-containing protein | - |
| ACLH2T_RS06520 (ACLH2T_06520) | - | 1313602..1314114 (-) | 513 | WP_159218494.1 | HNH endonuclease | - |
| ACLH2T_RS06525 (ACLH2T_06525) | - | 1314083..1314235 (-) | 153 | WP_163925238.1 | hypothetical protein | - |
| ACLH2T_RS06530 (ACLH2T_06530) | - | 1314320..1314640 (-) | 321 | WP_159218495.1 | bacteriocin immunity protein | - |
| ACLH2T_RS06535 (ACLH2T_06535) | - | 1314928..1315344 (-) | 417 | WP_159218496.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| ACLH2T_RS06540 (ACLH2T_06540) | - | 1315469..1315645 (-) | 177 | WP_159218497.1 | hypothetical protein | - |
| ACLH2T_RS06545 (ACLH2T_06545) | - | 1315654..1315932 (-) | 279 | WP_347920888.1 | hypothetical protein | - |
| ACLH2T_RS06550 (ACLH2T_06550) | - | 1315925..1316374 (-) | 450 | WP_159218499.1 | DUF1642 domain-containing protein | - |
| ACLH2T_RS06555 (ACLH2T_06555) | - | 1316374..1316901 (-) | 528 | WP_159218500.1 | DUF1642 domain-containing protein | - |
| ACLH2T_RS06560 (ACLH2T_06560) | - | 1316903..1317043 (-) | 141 | WP_412052690.1 | hypothetical protein | - |
| ACLH2T_RS06565 (ACLH2T_06565) | - | 1317071..1317442 (-) | 372 | WP_159218501.1 | N-acetylmuramoyl-L-alanine amidase | - |
| ACLH2T_RS06570 (ACLH2T_06570) | - | 1317429..1317578 (-) | 150 | WP_200834821.1 | hypothetical protein | - |
| ACLH2T_RS06575 (ACLH2T_06575) | - | 1317575..1317643 (-) | 69 | WP_235019140.1 | hypothetical protein | - |
| ACLH2T_RS06580 (ACLH2T_06580) | - | 1317710..1318342 (-) | 633 | WP_347920885.1 | RNA polymerase subunit sigma-70 | - |
| ACLH2T_RS06585 (ACLH2T_06585) | - | 1318460..1319242 (-) | 783 | WP_412052691.1 | ATP-binding protein | - |
| ACLH2T_RS06590 (ACLH2T_06590) | - | 1319256..1320020 (-) | 765 | WP_347920881.1 | conserved phage C-terminal domain-containing protein | - |
| ACLH2T_RS06595 (ACLH2T_06595) | - | 1319998..1320699 (-) | 702 | WP_274583868.1 | putative HNHc nuclease | - |
| ACLH2T_RS06600 (ACLH2T_06600) | ssb | 1320710..1321135 (-) | 426 | WP_347920878.1 | single-stranded DNA-binding protein | Machinery gene |
| ACLH2T_RS06605 (ACLH2T_06605) | - | 1321128..1321334 (-) | 207 | WP_024863113.1 | hypothetical protein | - |
| ACLH2T_RS06610 (ACLH2T_06610) | - | 1321327..1322052 (-) | 726 | WP_347920876.1 | ERF family protein | - |
| ACLH2T_RS06615 (ACLH2T_06615) | - | 1322053..1322508 (-) | 456 | WP_347920874.1 | chromosome segregation protein SMC | - |
| ACLH2T_RS06620 (ACLH2T_06620) | - | 1322734..1323351 (+) | 618 | WP_159209346.1 | hypothetical protein | - |
| ACLH2T_RS06625 (ACLH2T_06625) | - | 1323348..1323521 (-) | 174 | WP_336118393.1 | hypothetical protein | - |
| ACLH2T_RS06630 (ACLH2T_06630) | - | 1323622..1323951 (-) | 330 | WP_347920872.1 | DUF771 domain-containing protein | - |
| ACLH2T_RS06635 (ACLH2T_06635) | - | 1323965..1324687 (-) | 723 | WP_347920870.1 | Rha family transcriptional regulator | - |
| ACLH2T_RS06640 (ACLH2T_06640) | - | 1324747..1325055 (+) | 309 | WP_160216151.1 | hypothetical protein | - |
| ACLH2T_RS06645 (ACLH2T_06645) | - | 1325045..1325251 (-) | 207 | WP_094104442.1 | hypothetical protein | - |
| ACLH2T_RS06650 (ACLH2T_06650) | - | 1325313..1325516 (+) | 204 | WP_162013320.1 | hypothetical protein | - |
| ACLH2T_RS06655 (ACLH2T_06655) | - | 1325703..1325891 (-) | 189 | WP_159218508.1 | hypothetical protein | - |
| ACLH2T_RS06660 (ACLH2T_06660) | - | 1326157..1326513 (+) | 357 | WP_164905797.1 | helix-turn-helix domain-containing protein | - |
| ACLH2T_RS06665 (ACLH2T_06665) | - | 1326525..1326932 (+) | 408 | WP_214085115.1 | ImmA/IrrE family metallo-endopeptidase | - |
| ACLH2T_RS06670 (ACLH2T_06670) | - | 1327002..1327535 (+) | 534 | WP_115154865.1 | PH domain-containing protein | - |
| ACLH2T_RS06675 (ACLH2T_06675) | - | 1327687..1327884 (+) | 198 | WP_053905909.1 | hypothetical protein | - |
| ACLH2T_RS06680 (ACLH2T_06680) | - | 1328214..1329191 (+) | 978 | WP_347920865.1 | Abi family protein | - |
| ACLH2T_RS06685 (ACLH2T_06685) | - | 1329330..1330445 (+) | 1116 | WP_347920863.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15626.39 Da Isoelectric Point: 7.9972
>NTDB_id=1086731 ACLH2T_RS06600 WP_347920878.1 1320710..1321135(-) (ssb) [Pediococcus acidilactici strain GR-5]
MINRTVLIGRLTKDVELRHTAKGDAVASFTVAVNRQFTNSQGEREVDFINCVMWRKAAENFAKYTQKGSLVGIEGRIQTR
SYENQQGQRVYVTEVVAENFSLLDSKPKGNQQNNARQASTPGDPFANGGQSIDIGDDSLPF
MINRTVLIGRLTKDVELRHTAKGDAVASFTVAVNRQFTNSQGEREVDFINCVMWRKAAENFAKYTQKGSLVGIEGRIQTR
SYENQQGQRVYVTEVVAENFSLLDSKPKGNQQNNARQASTPGDPFANGGQSIDIGDDSLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=1086731 ACLH2T_RS06600 WP_347920878.1 1320710..1321135(-) (ssb) [Pediococcus acidilactici strain GR-5]
ATGATTAATCGAACAGTACTAATAGGACGCCTAACTAAAGATGTTGAGCTTCGCCACACGGCTAAAGGCGATGCGGTAGC
TAGTTTTACTGTGGCAGTTAACCGACAGTTTACCAACTCACAGGGTGAACGCGAAGTGGATTTCATCAACTGTGTAATGT
GGCGTAAGGCAGCAGAAAACTTTGCCAAGTACACACAAAAAGGTTCGTTGGTAGGCATTGAGGGTCGAATTCAAACTCGT
TCCTACGAGAATCAACAAGGACAACGAGTGTACGTTACCGAAGTTGTTGCGGAAAACTTCTCGTTGCTGGATTCGAAACC
GAAAGGCAACCAGCAAAATAACGCACGGCAAGCATCAACGCCGGGAGATCCATTCGCTAATGGCGGACAATCAATTGATA
TTGGTGACGATAGTTTGCCTTTCTAA
ATGATTAATCGAACAGTACTAATAGGACGCCTAACTAAAGATGTTGAGCTTCGCCACACGGCTAAAGGCGATGCGGTAGC
TAGTTTTACTGTGGCAGTTAACCGACAGTTTACCAACTCACAGGGTGAACGCGAAGTGGATTTCATCAACTGTGTAATGT
GGCGTAAGGCAGCAGAAAACTTTGCCAAGTACACACAAAAAGGTTCGTTGGTAGGCATTGAGGGTCGAATTCAAACTCGT
TCCTACGAGAATCAACAAGGACAACGAGTGTACGTTACCGAAGTTGTTGCGGAAAACTTCTCGTTGCTGGATTCGAAACC
GAAAGGCAACCAGCAAAATAACGCACGGCAAGCATCAACGCCGGGAGATCCATTCGCTAATGGCGGACAATCAATTGATA
TTGGTGACGATAGTTTGCCTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
57.059 |
100 |
0.688 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.488 |
100 |
0.652 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.185 |
76.596 |
0.461 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.845 |
100 |
0.411 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
40.845 |
100 |
0.411 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
40.141 |
100 |
0.404 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
40.141 |
100 |
0.404 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
40.141 |
100 |
0.404 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
40.141 |
100 |
0.404 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.141 |
100 |
0.404 |
| ssbA | Streptococcus mutans UA159 |
36.62 |
100 |
0.369 |