Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACLH2T_RS03560 | Genome accession | NZ_CP177348 |
| Coordinates | 731518..731943 (+) | Length | 141 a.a. |
| NCBI ID | WP_347921137.1 | Uniprot ID | - |
| Organism | Pediococcus acidilactici strain GR-5 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 722201..765153 | 731518..731943 | within | 0 |
Gene organization within MGE regions
Location: 722201..765153
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLH2T_RS03470 (ACLH2T_03470) | - | 722201..722437 (+) | 237 | WP_002829787.1 | hypothetical protein | - |
| ACLH2T_RS03475 (ACLH2T_03475) | - | 722721..722975 (+) | 255 | WP_002829785.1 | helix-turn-helix domain-containing protein | - |
| ACLH2T_RS03485 (ACLH2T_03485) | - | 723381..724517 (-) | 1137 | WP_347921146.1 | site-specific integrase | - |
| ACLH2T_RS03490 (ACLH2T_03490) | - | 724692..725243 (+) | 552 | WP_098040700.1 | hypothetical protein | - |
| ACLH2T_RS03495 (ACLH2T_03495) | - | 725233..725364 (-) | 132 | WP_255031768.1 | hypothetical protein | - |
| ACLH2T_RS03500 (ACLH2T_03500) | - | 725470..726360 (-) | 891 | WP_347921143.1 | DUF5067 domain-containing protein | - |
| ACLH2T_RS03505 (ACLH2T_03505) | - | 726429..726827 (-) | 399 | WP_098040702.1 | hypothetical protein | - |
| ACLH2T_RS03510 (ACLH2T_03510) | - | 726862..727292 (-) | 431 | Protein_688 | PH domain-containing protein | - |
| ACLH2T_RS03515 (ACLH2T_03515) | - | 727349..727795 (-) | 447 | WP_235015672.1 | ImmA/IrrE family metallo-endopeptidase | - |
| ACLH2T_RS03520 (ACLH2T_03520) | - | 727804..728145 (-) | 342 | WP_098040704.1 | helix-turn-helix domain-containing protein | - |
| ACLH2T_RS03525 (ACLH2T_03525) | - | 728403..728612 (+) | 210 | WP_065124225.1 | helix-turn-helix domain-containing protein | - |
| ACLH2T_RS03530 (ACLH2T_03530) | - | 728626..729360 (+) | 735 | WP_347921141.1 | Rha family transcriptional regulator | - |
| ACLH2T_RS03535 (ACLH2T_03535) | - | 729363..729548 (+) | 186 | WP_347921139.1 | hypothetical protein | - |
| ACLH2T_RS03540 (ACLH2T_03540) | - | 729566..729904 (+) | 339 | WP_098040706.1 | DUF771 domain-containing protein | - |
| ACLH2T_RS03545 (ACLH2T_03545) | - | 730142..730600 (+) | 459 | WP_235015673.1 | chromosome segregation protein SMC | - |
| ACLH2T_RS03550 (ACLH2T_03550) | - | 730601..731326 (+) | 726 | WP_138492715.1 | ERF family protein | - |
| ACLH2T_RS03555 (ACLH2T_03555) | - | 731319..731525 (+) | 207 | WP_024863113.1 | hypothetical protein | - |
| ACLH2T_RS03560 (ACLH2T_03560) | ssb | 731518..731943 (+) | 426 | WP_347921137.1 | single-stranded DNA-binding protein | Machinery gene |
| ACLH2T_RS03565 (ACLH2T_03565) | - | 731954..732631 (+) | 678 | WP_347921136.1 | putative HNHc nuclease | - |
| ACLH2T_RS03570 (ACLH2T_03570) | - | 732621..732845 (+) | 225 | WP_347921135.1 | hypothetical protein | - |
| ACLH2T_RS03575 (ACLH2T_03575) | - | 732875..733618 (+) | 744 | WP_347921133.1 | hypothetical protein | - |
| ACLH2T_RS03580 (ACLH2T_03580) | - | 733599..734414 (+) | 816 | WP_347921131.1 | ATP-binding protein | - |
| ACLH2T_RS03585 (ACLH2T_03585) | - | 734532..735164 (+) | 633 | WP_347921129.1 | RNA polymerase subunit sigma-70 | - |
| ACLH2T_RS03590 (ACLH2T_03590) | - | 735145..735546 (+) | 402 | WP_204229941.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ACLH2T_RS03595 (ACLH2T_03595) | - | 735543..735692 (+) | 150 | WP_317059631.1 | hypothetical protein | - |
| ACLH2T_RS03600 (ACLH2T_03600) | - | 735679..736050 (+) | 372 | WP_347921126.1 | N-acetylmuramoyl-L-alanine amidase | - |
| ACLH2T_RS03605 (ACLH2T_03605) | - | 736092..736232 (+) | 141 | WP_412052709.1 | hypothetical protein | - |
| ACLH2T_RS03610 (ACLH2T_03610) | - | 736216..736509 (+) | 294 | WP_347921122.1 | hypothetical protein | - |
| ACLH2T_RS03615 (ACLH2T_03615) | - | 736509..736766 (+) | 258 | WP_347921121.1 | hypothetical protein | - |
| ACLH2T_RS03620 (ACLH2T_03620) | - | 736767..737060 (+) | 294 | WP_347921119.1 | hypothetical protein | - |
| ACLH2T_RS03625 (ACLH2T_03625) | - | 737064..737264 (+) | 201 | WP_347921117.1 | hypothetical protein | - |
| ACLH2T_RS03630 (ACLH2T_03630) | - | 737261..737425 (+) | 165 | WP_347921115.1 | hypothetical protein | - |
| ACLH2T_RS03635 (ACLH2T_03635) | - | 737607..738023 (+) | 417 | WP_347921114.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| ACLH2T_RS03640 (ACLH2T_03640) | - | 738485..738718 (+) | 234 | WP_347921112.1 | hypothetical protein | - |
| ACLH2T_RS03645 (ACLH2T_03645) | - | 738910..739401 (+) | 492 | WP_347921110.1 | terminase small subunit | - |
| ACLH2T_RS03650 (ACLH2T_03650) | - | 739394..740740 (+) | 1347 | WP_347921108.1 | PBSX family phage terminase large subunit | - |
| ACLH2T_RS03655 (ACLH2T_03655) | - | 740861..742141 (+) | 1281 | WP_347921478.1 | phage portal protein | - |
| ACLH2T_RS03660 (ACLH2T_03660) | - | 742125..743090 (+) | 966 | WP_347921106.1 | minor capsid protein | - |
| ACLH2T_RS03665 (ACLH2T_03665) | - | 743102..743311 (+) | 210 | WP_195459779.1 | hypothetical protein | - |
| ACLH2T_RS03670 (ACLH2T_03670) | - | 743426..744142 (+) | 717 | WP_058121207.1 | DUF4355 domain-containing protein | - |
| ACLH2T_RS03675 (ACLH2T_03675) | - | 744142..744960 (+) | 819 | WP_347921104.1 | N4-gp56 family major capsid protein | - |
| ACLH2T_RS03680 (ACLH2T_03680) | - | 744978..745244 (+) | 267 | WP_347921475.1 | Ig-like domain-containing protein | - |
| ACLH2T_RS03685 (ACLH2T_03685) | - | 745255..745620 (+) | 366 | WP_176582122.1 | phage head-tail connector protein | - |
| ACLH2T_RS03690 (ACLH2T_03690) | - | 745625..745933 (+) | 309 | WP_241531648.1 | hypothetical protein | - |
| ACLH2T_RS03695 (ACLH2T_03695) | - | 745926..746267 (+) | 342 | WP_347921101.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| ACLH2T_RS03700 (ACLH2T_03700) | - | 746292..746675 (+) | 384 | WP_070366319.1 | hypothetical protein | - |
| ACLH2T_RS03705 (ACLH2T_03705) | - | 746687..747343 (+) | 657 | WP_070366318.1 | phage major tail protein, TP901-1 family | - |
| ACLH2T_RS03710 (ACLH2T_03710) | - | 747416..747757 (+) | 342 | WP_176582117.1 | tail assembly chaperone | - |
| ACLH2T_RS03715 (ACLH2T_03715) | - | 747904..748182 (+) | 279 | WP_347921099.1 | hypothetical protein | - |
| ACLH2T_RS03720 (ACLH2T_03720) | - | 748166..751186 (+) | 3021 | WP_347921097.1 | phage tail tape measure protein | - |
| ACLH2T_RS03725 (ACLH2T_03725) | - | 751186..751950 (+) | 765 | WP_347921095.1 | phage tail protein | - |
| ACLH2T_RS03730 (ACLH2T_03730) | - | 751950..754910 (+) | 2961 | WP_347921093.1 | peptidoglycan amidohydrolase family protein | - |
| ACLH2T_RS03735 (ACLH2T_03735) | - | 754894..755340 (+) | 447 | WP_347921091.1 | hypothetical protein | - |
| ACLH2T_RS03740 (ACLH2T_03740) | - | 755344..757188 (+) | 1845 | WP_347921089.1 | BppU family phage baseplate upper protein | - |
| ACLH2T_RS03745 (ACLH2T_03745) | - | 757207..757968 (+) | 762 | WP_176582256.1 | hypothetical protein | - |
| ACLH2T_RS03750 (ACLH2T_03750) | - | 757970..758284 (+) | 315 | WP_347921087.1 | DUF2977 domain-containing protein | - |
| ACLH2T_RS03755 (ACLH2T_03755) | - | 758284..758430 (+) | 147 | WP_176582254.1 | XkdX family protein | - |
| ACLH2T_RS03760 (ACLH2T_03760) | - | 758537..758764 (+) | 228 | WP_412052710.1 | hypothetical protein | - |
| ACLH2T_RS03765 (ACLH2T_03765) | - | 758764..759006 (+) | 243 | WP_347921083.1 | phage holin | - |
| ACLH2T_RS03770 (ACLH2T_03770) | - | 758990..760111 (+) | 1122 | WP_347921081.1 | peptidoglycan recognition family protein | - |
| ACLH2T_RS03775 (ACLH2T_03775) | - | 761236..762213 (+) | 978 | WP_159208851.1 | GMP reductase | - |
| ACLH2T_RS03780 (ACLH2T_03780) | - | 762542..764749 (-) | 2208 | WP_002829782.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| ACLH2T_RS03785 (ACLH2T_03785) | - | 764965..765153 (+) | 189 | WP_008842200.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15582.30 Da Isoelectric Point: 8.0068
>NTDB_id=1086726 ACLH2T_RS03560 WP_347921137.1 731518..731943(+) (ssb) [Pediococcus acidilactici strain GR-5]
MINRTVLIGRLTKDVELRHTAKGDAVASFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIEGRIQTR
SYENQQGQRVYVTEVVADNFSLLDSKPKGNQQNNARQASTPGDPFANGGQSIDIGDDSLPF
MINRTVLIGRLTKDVELRHTAKGDAVASFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIEGRIQTR
SYENQQGQRVYVTEVVADNFSLLDSKPKGNQQNNARQASTPGDPFANGGQSIDIGDDSLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=1086726 ACLH2T_RS03560 WP_347921137.1 731518..731943(+) (ssb) [Pediococcus acidilactici strain GR-5]
ATGATTAATCGAACAGTACTAATAGGACGTTTAACTAAAGATGTTGAGCTTCGCCACACAGCTAAAGGTGATGCGGTAGC
TAGTTTTACCGTGGCAGTTAACCGACAGTTTACCAACTCACAGGGTGAACGTGAAGCGGATTTTATCAACTGCGTAATGT
GGCGGAAAGCGGCGGAAAACTTTGCCAACTTCACGCGTAAAGGTTCTCTAGTAGGCATTGAAGGGCGGATTCAAACCCGT
TCGTACGAAAACCAACAAGGACAACGAGTTTATGTAACTGAGGTTGTAGCTGATAACTTCTCGTTGCTAGATTCGAAACC
AAAAGGCAACCAGCAAAATAACGCACGGCAAGCATCAACGCCGGGAGATCCGTTCGCTAATGGCGGACAATCAATTGATA
TTGGTGACGATAGTTTGCCTTTCTAA
ATGATTAATCGAACAGTACTAATAGGACGTTTAACTAAAGATGTTGAGCTTCGCCACACAGCTAAAGGTGATGCGGTAGC
TAGTTTTACCGTGGCAGTTAACCGACAGTTTACCAACTCACAGGGTGAACGTGAAGCGGATTTTATCAACTGCGTAATGT
GGCGGAAAGCGGCGGAAAACTTTGCCAACTTCACGCGTAAAGGTTCTCTAGTAGGCATTGAAGGGCGGATTCAAACCCGT
TCGTACGAAAACCAACAAGGACAACGAGTTTATGTAACTGAGGTTGTAGCTGATAACTTCTCGTTGCTAGATTCGAAACC
AAAAGGCAACCAGCAAAATAACGCACGGCAAGCATCAACGCCGGGAGATCCGTTCGCTAATGGCGGACAATCAATTGATA
TTGGTGACGATAGTTTGCCTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.412 |
100 |
0.716 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.651 |
100 |
0.667 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.185 |
76.596 |
0.461 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.845 |
100 |
0.411 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
40.845 |
100 |
0.411 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
40.141 |
100 |
0.404 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
40.141 |
100 |
0.404 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
40.141 |
100 |
0.404 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.141 |
100 |
0.404 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
40.141 |
100 |
0.404 |
| ssbA | Streptococcus mutans UA159 |
36.62 |
100 |
0.369 |