Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACJVC4_RS05840 Genome accession   NZ_CP177179
Coordinates   1184550..1185389 (-) Length   279 a.a.
NCBI ID   WP_002891064.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-NRLLH     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1179550..1190389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVC4_RS05820 - 1180017..1180664 (-) 648 WP_037597862.1 nisG -
  ACJVC4_RS05825 - 1180651..1181394 (-) 744 WP_080583699.1 lantibiotic ABC transporter permease -
  ACJVC4_RS05830 - 1181381..1182058 (-) 678 WP_002891062.1 ABC transporter ATP-binding protein -
  ACJVC4_RS05835 topA 1182238..1184382 (-) 2145 WP_002891063.1 type I DNA topoisomerase -
  ACJVC4_RS05840 dprA 1184550..1185389 (-) 840 WP_002891064.1 DNA-processing protein DprA Machinery gene
  ACJVC4_RS05845 - 1185458..1186378 (-) 921 WP_002891065.1 ROK family protein -
  ACJVC4_RS05850 - 1186389..1187156 (-) 768 WP_037597864.1 ribonuclease HII -
  ACJVC4_RS05855 ylqF 1187143..1187997 (-) 855 WP_002891069.1 ribosome biogenesis GTPase YlqF -
  ACJVC4_RS05860 - 1188126..1188815 (-) 690 WP_002891070.1 XRE family transcriptional regulator -
  ACJVC4_RS05865 - 1188910..1189425 (-) 516 WP_037597865.1 transcription repressor NadR -
  ACJVC4_RS05870 - 1189448..1189975 (-) 528 WP_002891072.1 ECF transporter S component -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 31292.26 Da        Isoelectric Point: 8.6644

>NTDB_id=1085804 ACJVC4_RS05840 WP_002891064.1 1184550..1185389(-) (dprA) [Streptococcus salivarius strain MRD-NRLLH]
MNNFELFKLKAAGLTNLNILNILDYQKNQDKKLSLRDMAVVSKSKNAVLFMERYKNLDIKQLKEEFQRFPTLSIFDKEYP
IELKHSYNPPVLLFYQGNIDLLSKPKLAVVGARKCSEIGKQSVRKIVSELGNQFTIVSGLARGIDTCAHMEALKNKGNTI
AVIGTGLDVYYPKENKALQDYMAKNHLVLSEYGPGEQPLKYHFPERNRIISGLCQGVMVVEAKLRSGSLITCERAMEEGR
DVFAIPGNILDGKSDGCHHLIQEGAKCITTGFDILSEFS

Nucleotide


Download         Length: 840 bp        

>NTDB_id=1085804 ACJVC4_RS05840 WP_002891064.1 1184550..1185389(-) (dprA) [Streptococcus salivarius strain MRD-NRLLH]
ATGAATAACTTTGAACTTTTTAAACTAAAAGCAGCTGGATTGACAAATTTAAATATTCTTAATATTTTAGACTATCAAAA
AAATCAAGATAAAAAACTGAGCTTACGTGATATGGCAGTGGTATCTAAGTCTAAAAATGCAGTTCTCTTTATGGAAAGAT
ACAAGAATTTAGATATTAAGCAGCTTAAGGAAGAATTTCAACGTTTTCCGACCTTATCAATTTTTGATAAGGAGTATCCC
ATTGAGCTGAAGCATAGCTATAATCCACCTGTCCTCCTCTTTTATCAAGGGAATATTGATTTGCTAAGTAAACCAAAGCT
AGCTGTTGTTGGGGCAAGAAAGTGCTCCGAAATAGGCAAACAGTCTGTTCGAAAAATTGTTAGTGAACTTGGGAATCAAT
TTACTATTGTGAGTGGTTTGGCGCGTGGGATTGATACTTGTGCTCATATGGAGGCCTTGAAAAATAAAGGAAACACCATT
GCAGTTATCGGGACAGGACTTGATGTTTATTATCCAAAAGAAAATAAAGCTTTGCAGGACTATATGGCCAAAAATCATTT
AGTTCTTTCAGAATATGGACCGGGTGAACAGCCACTTAAATACCATTTCCCTGAACGAAATCGGATAATTTCTGGATTGT
GTCAAGGGGTTATGGTGGTTGAAGCTAAGCTTCGCTCGGGAAGTCTGATTACTTGTGAGCGTGCCATGGAAGAAGGTAGA
GATGTTTTTGCTATTCCAGGAAATATTTTAGATGGAAAGTCAGACGGATGTCATCACTTGATTCAAGAGGGTGCAAAGTG
CATTACGACAGGGTTTGACATCCTTTCAGAGTTTTCTTGA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)

DNA recombination-mediator protein A (DNA_processg_A)

(70-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

73.835

100

0.738
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

65.108

99.642

0.649
  dprA/cilB/dalA Streptococcus pneumoniae D39

65.108

99.642

0.649
  dprA/cilB/dalA Streptococcus pneumoniae R6

65.108

99.642

0.649
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

65.108

99.642

0.649
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

64.748

99.642

0.645
  dprA/cilB/dalA Streptococcus mitis SK321

64.748

99.642

0.645
  dprA Lactococcus lactis subsp. cremoris KW2

60.791

99.642

0.606
  dprA Acinetobacter baumannii D1279779

39.405

96.416

0.38
  dprA Acinetobacter baumannii strain A118

39.405

96.416

0.38
  dprA Latilactobacillus sakei subsp. sakei 23K

40.154

92.832

0.373
  dprA Bacillus subtilis subsp. subtilis str. 168

49.048

75.269

0.369
  dprA Staphylococcus aureus N315

41.803

87.455

0.366
  dprA Staphylococcus aureus MW2

41.803

87.455

0.366

Multiple sequence alignment