Detailed information NTG0108216

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: AACH64_RS13600
• Genome accession: NZ_AP029031
• Coordinates: 2773403..2773840 (-)
• Length: 145 a.a.
• NCBI ID: WP_011098432.1
• Uniprot ID: A0A4Q0VB51
• Organism: Clostridium tetani strain KHSU-154301-001
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2768403..2778840

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AACH64_RS13575 (K154301001_26030)	rplI	2769162..2769605 (-)	444	WP_011098436.1	50S ribosomal protein L9	-
AACH64_RS13580 (K154301001_26040)	-	2769602..2771596 (-)	1995	WP_035141195.1	DHH family phosphoesterase	-
AACH64_RS13585 (K154301001_26050)	-	2771609..2772598 (-)	990	WP_011098434.1	YybS family protein	-
AACH64_RS13590 (K154301001_26060)	-	2772612..2772929 (-)	318	WP_011098433.1	MazG-like family protein	-
AACH64_RS13595 (K154301001_26070)	rpsR	2773116..2773382 (-)	267	WP_023436916.1	30S ribosomal protein S18	-
AACH64_RS13600 (K154301001_26080)	ssb	2773403..2773840 (-)	438	WP_011098432.1	single-stranded DNA-binding protein	Machinery gene
AACH64_RS13605 (K154301001_26090)	rpsF	2773856..2774140 (-)	285	WP_023436913.1	30S ribosomal protein S6	-
AACH64_RS13610 (K154301001_26100)	-	2774238..2774438 (-)	201	WP_035141192.1	DUF951 domain-containing protein	-
AACH64_RS13615 (K154301001_26110)	-	2774431..2775315 (-)	885	WP_129009738.1	mechanosensitive ion channel family protein	-
AACH64_RS13620 (K154301001_26120)	ytvI	2775552..2776607 (+)	1056	WP_011098430.1	sporulation integral membrane protein YtvI	-
AACH64_RS13625 (K154301001_26130)	yyaC	2776663..2777238 (+)	576	WP_011098429.1	spore protease YyaC	-
AACH64_RS13630 (K154301001_26140)	-	2777260..2777757 (-)	498	WP_129028828.1	DUF4446 family protein	-
AACH64_RS13635 (K154301001_26150)	-	2777797..2778654 (-)	858	WP_011098427.1	ParB/RepB/Spo0J family partition protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16180.96 Da
• Isoelectric Point: 4.6708

>NTDB_id=108216 AACH64_RS13600 WP_011098432.1 2773403..2773840(-) (ssb) [Clostridium tetani strain KHSU-154301-001]
MNRVVLIGRLTKDPELKFTPGTGTAVTTFVLAVDRRFSKDGKNEADFIPVVVWGKQAESTANYMSKGKLIGISGRIQTRS
YEAKDGTRRYVTEVVADEVKFLEWGNKQSSGSQGFNNFESDPLSYNNEDNYNDDITPVDEGEVPF

Nucleotide

• Length: 438 bp

>NTDB_id=108216 AACH64_RS13600 WP_011098432.1 2773403..2773840(-) (ssb) [Clostridium tetani strain KHSU-154301-001]
ATGAATCGTGTAGTCTTAATTGGAAGGCTTACAAAAGATCCTGAATTAAAGTTTACTCCGGGAACAGGAACAGCTGTAAC
TACTTTTGTTTTAGCTGTAGATAGAAGGTTTTCCAAAGATGGAAAAAATGAAGCTGACTTTATCCCTGTAGTAGTATGGG
GAAAACAGGCAGAATCAACAGCTAATTATATGAGTAAGGGTAAACTTATTGGAATTAGTGGAAGAATTCAAACTAGAAGT
TATGAGGCTAAAGATGGCACTAGAAGATATGTTACAGAAGTTGTAGCAGATGAGGTTAAATTCCTAGAATGGGGAAATAA
ACAGTCATCAGGTTCTCAAGGCTTTAATAATTTTGAATCAGATCCACTAAGTTATAATAATGAAGATAATTACAATGATG
ATATAACTCCTGTGGACGAAGGAGAAGTTCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-102)

3D structure

• AlphaFold DB: A0A4Q0VB51

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	42.262	100	0.49
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.265	80.69	0.462
ssbB	Streptococcus sobrinus strain NIDR 6715-7	42.857	100	0.434
ssbA	Streptococcus mutans UA159	41.379	100	0.414
ssbB/cilA	Streptococcus mitis NCTC 12261	38.095	100	0.386
ssbB/cilA	Streptococcus pneumoniae TIGR4	37.415	100	0.379
ssbB	Bacillus subtilis subsp. subtilis str. 168	53.398	71.034	0.379
ssbB/cilA	Streptococcus pneumoniae Rx1	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae D39	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae R6	36.735	100	0.372
ssbB/cilA	Streptococcus mitis SK321	36.735	100	0.372