Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACK2JZ_RS03170 Genome accession   NZ_CP176623
Coordinates   700984..701436 (-) Length   150 a.a.
NCBI ID   WP_002368292.1    Uniprot ID   A0AAX2KKQ5
Organism   Enterococcus faecalis strain SFAD86     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 695984..706436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2JZ_RS03145 - 696606..697919 (-) 1314 WP_065536159.1 hypothetical protein -
  ACK2JZ_RS03150 - 697909..698040 (-) 132 WP_002368288.1 hypothetical protein -
  ACK2JZ_RS03155 - 698748..700148 (-) 1401 WP_080476171.1 DNA cytosine methyltransferase -
  ACK2JZ_RS03160 - 700228..700806 (-) 579 WP_065535857.1 thermonuclease family protein -
  ACK2JZ_RS03165 - 700818..700970 (-) 153 WP_065535856.1 hypothetical protein -
  ACK2JZ_RS03170 ssb 700984..701436 (-) 453 WP_002368292.1 single-stranded DNA-binding protein Machinery gene
  ACK2JZ_RS03175 - 701502..701996 (-) 495 WP_080476170.1 PcfR -
  ACK2JZ_RS03180 - 702051..702281 (+) 231 WP_002360849.1 hypothetical protein -
  ACK2JZ_RS03185 - 702847..703032 (+) 186 WP_002360847.1 hypothetical protein -
  ACK2JZ_RS03190 - 703017..703208 (+) 192 WP_025191432.1 DpnD/PcfM family protein -
  ACK2JZ_RS03195 - 703232..703822 (+) 591 WP_002360842.1 hypothetical protein -
  ACK2JZ_RS03200 - 703927..704700 (+) 774 WP_065535854.1 Cas9 inhibitor AcrIIA9 family protein -
  ACK2JZ_RS03205 - 704700..706043 (+) 1344 WP_065535853.1 PcfJ domain-containing protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16794.70 Da        Isoelectric Point: 4.9166

>NTDB_id=1081566 ACK2JZ_RS03170 WP_002368292.1 700984..701436(-) (ssb) [Enterococcus faecalis strain SFAD86]
MINNVTLVGRLTKDCDLRYTSSGVAVAAFTLAVNRNFTNQNGEREADYIQCVIWRKPAETLANYTRKGTLIGLVGRLQTR
NYENQQGQRIYVTEVVVESFQLLESKEVSQQRGVNASNPTPVGQQESNTQQPFPDLEGSSIEISDHDLPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=1081566 ACK2JZ_RS03170 WP_002368292.1 700984..701436(-) (ssb) [Enterococcus faecalis strain SFAD86]
ATGATTAATAATGTGACTTTAGTAGGAAGACTTACAAAAGACTGTGATTTGCGTTATACGTCAAGTGGTGTAGCTGTTGC
GGCTTTTACACTAGCAGTTAACCGGAATTTTACAAATCAAAATGGTGAACGTGAAGCAGACTATATTCAGTGTGTGATTT
GGCGTAAGCCTGCAGAAACTTTAGCAAACTATACACGAAAAGGAACATTGATTGGTCTTGTGGGTAGACTTCAAACACGT
AACTATGAGAATCAACAAGGACAACGTATTTATGTGACAGAAGTGGTTGTAGAAAGCTTCCAATTGTTAGAGTCAAAAGA
AGTTAGTCAACAACGTGGCGTTAACGCTTCTAATCCTACACCAGTTGGACAGCAGGAAAGCAATACGCAACAACCCTTTC
CAGATTTAGAAGGTAGTTCTATTGAGATTTCAGATCATGACTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.627
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.023

100

0.6
  ssbB/cilA Streptococcus pneumoniae TIGR4

44

100

0.44
  ssbB/cilA Streptococcus pneumoniae Rx1

43.333

100

0.433
  ssbB/cilA Streptococcus mitis NCTC 12261

43.333

100

0.433
  ssbB/cilA Streptococcus pneumoniae D39

43.333

100

0.433
  ssbB/cilA Streptococcus pneumoniae R6

43.333

100

0.433
  ssbB/cilA Streptococcus mitis SK321

43.333

100

0.433
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

70.667

0.413
  ssbA Streptococcus mutans UA159

40

100

0.4
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.458

78.667

0.373

Multiple sequence alignment