Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACKQF3_RS02385 Genome accession   NZ_CP175806
Coordinates   500940..502166 (-) Length   408 a.a.
NCBI ID   WP_000648512.1    Uniprot ID   -
Organism   Vibrio cholerae strain N19-2759     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 495940..507166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKQF3_RS02365 (ACKQF3_02365) yacG 498275..498472 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  ACKQF3_RS02370 (ACKQF3_02370) zapD 498630..499370 (-) 741 WP_000207194.1 cell division protein ZapD -
  ACKQF3_RS02375 (ACKQF3_02375) coaE 499402..500010 (-) 609 WP_000011549.1 dephospho-CoA kinase -
  ACKQF3_RS02380 (ACKQF3_02380) pilD 500007..500882 (-) 876 WP_000418750.1 A24 family peptidase Machinery gene
  ACKQF3_RS02385 (ACKQF3_02385) pilC 500940..502166 (-) 1227 WP_000648512.1 type II secretion system F family protein Machinery gene
  ACKQF3_RS02390 (ACKQF3_02390) pilB 502209..503897 (-) 1689 WP_317006818.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACKQF3_RS02395 (ACKQF3_02395) pilA 503897..504352 (-) 456 WP_162923374.1 pilin Machinery gene
  ACKQF3_RS02400 (ACKQF3_02400) nadC 504597..505487 (-) 891 WP_000665275.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACKQF3_RS02405 (ACKQF3_02405) ampD 505789..506334 (+) 546 WP_084988581.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACKQF3_RS02410 (ACKQF3_02410) fldB 506612..507130 (-) 519 WP_084988580.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45150.43 Da        Isoelectric Point: 10.3424

>NTDB_id=1078966 ACKQF3_RS02385 WP_000648512.1 500940..502166(-) (pilC) [Vibrio cholerae strain N19-2759]
MKATQTLPLKNYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAATIFG
LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1078966 ACKQF3_RS02385 WP_000648512.1 500940..502166(-) (pilC) [Vibrio cholerae strain N19-2759]
ATGAAAGCGACCCAAACCTTACCTCTGAAAAATTATCGCTGGAAAGGCATCAACAGCAACGGCAAAAAAGTTTCCGGCCA
GATGCTCGCCATCTCCGAAATCGAGGTGCGCGATAAGCTCAAAGATCAGCATATTCAGATCAAAAAACTCAAAAAAGGCA
GTGTGTCTCTTTTGGCACGCCTAACCCATCGCGTGAAAAGTAAAGATATTACGATTTTGACTCGGCAGTTAGCGACCATG
CTCACCACGGGCGTACCCATTGTGCAAGCCCTCAAGTTGGTGGGCGATAATCACCGTAAAGCTGAGATGAAATCGATTCT
GGCGCAAATTACCAAAAGCGTGGAAGCGGGCACGCCGCTTTCCAAGGCGATGCGTACCGCCAGCGCCCATTTTGATACCT
TGTATGTCGACTTAGTGGAAACCGGAGAGATGTCCGGTAACTTACCTGAGGTGTTTGAGCGTTTGGCCACCTACCGCGAG
AAAAGCGAACAACTACGCGCCAAGGTGATTAAAGCGCTCATCTACCCCAGCATGGTGGTGTTGGTCGCGCTCGGAGTTTC
CTACTTAATGCTCACCATGGTCATCCCAGAATTTGAAAGCATGTTTAAAGGCTTTGGTGCAGAACTGCCTTGGTTTACGC
AGCAAGTACTGAAACTCTCACACTGGGTGCAGGCTTACAGTTTATGGGCATTTATCGCCATCGCAGCAACCATTTTTGGC
TTGAAAGCGCTGCGTAAAAACTCTTTCCAGATCCGTTTAAAAACCAGCCGCTTAGGGCTGAAATTTCCGATTATTGGTAA
TGTGCTCGCTAAGGCTTCCATCGCCAAATTCAGCCGCACCCTCGCCACCAGCTTTGCCGCGGGGATCCCGATCCTCGCCA
GTTTAAAAACCACGGCCAAAACCTCCGGCAATGTGCACTTTGAAACCGCGATTAATGAGGTGTACCGCGATACCGCTGCG
GGTATGCCGATGTACATTGCCATGCGCAATACCGACGCTTTTCCCGAAATGGTGCTGCAAATGGTGATGATCGGTGAAGA
GTCTGGGCAATTAGACGACATGCTCAACAAGGTCGCGACCATCTATGAATTTGAAGTCGATAACACGGTCGATAACTTGG
GCAAGATTCTTGAGCCACTGATCATCGTCTTTCTTGGGACGGTTGTGGGCGGCTTAGTGGTGGCGATGTACTTACCTATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

99.51

100

0.995
  pilC Vibrio campbellii strain DS40M4

73.75

98.039

0.723
  pilC Acinetobacter baumannii D1279779

42.647

100

0.426
  pilC Acinetobacter baylyi ADP1

41.769

99.755

0.417
  pilC Legionella pneumophila strain ERS1305867

42.211

97.549

0.412
  pilC Pseudomonas stutzeri DSM 10701

42.105

97.794

0.412
  pilG Neisseria gonorrhoeae MS11

40.796

98.529

0.402
  pilG Neisseria meningitidis 44/76-A

40.299

98.529

0.397

Multiple sequence alignment