Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACKQF3_RS02380 Genome accession   NZ_CP175806
Coordinates   500007..500882 (-) Length   291 a.a.
NCBI ID   WP_000418750.1    Uniprot ID   -
Organism   Vibrio cholerae strain N19-2759     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 495007..505882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKQF3_RS02360 (ACKQF3_02360) parC 495703..497988 (+) 2286 WP_000102504.1 DNA topoisomerase IV subunit A -
  ACKQF3_RS02365 (ACKQF3_02365) yacG 498275..498472 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  ACKQF3_RS02370 (ACKQF3_02370) zapD 498630..499370 (-) 741 WP_000207194.1 cell division protein ZapD -
  ACKQF3_RS02375 (ACKQF3_02375) coaE 499402..500010 (-) 609 WP_000011549.1 dephospho-CoA kinase -
  ACKQF3_RS02380 (ACKQF3_02380) pilD 500007..500882 (-) 876 WP_000418750.1 A24 family peptidase Machinery gene
  ACKQF3_RS02385 (ACKQF3_02385) pilC 500940..502166 (-) 1227 WP_000648512.1 type II secretion system F family protein Machinery gene
  ACKQF3_RS02390 (ACKQF3_02390) pilB 502209..503897 (-) 1689 WP_317006818.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACKQF3_RS02395 (ACKQF3_02395) pilA 503897..504352 (-) 456 WP_162923374.1 pilin Machinery gene
  ACKQF3_RS02400 (ACKQF3_02400) nadC 504597..505487 (-) 891 WP_000665275.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32461.75 Da        Isoelectric Point: 7.1618

>NTDB_id=1078965 ACKQF3_RS02380 WP_000418750.1 500007..500882(-) (pilD) [Vibrio cholerae strain N19-2759]
MELFYFYPWLFPVLATLFGLIVGSFLNVVIYRLPKIMEREWRAECAASFPEYGITPPEGKLTLSLPRSTCPHCQTPIRVI
DNIPLLSWLALRGQCSHCKAPISARYPLIELLTALMSLVIATHFPFGVFAVALLFFSYVLIAATFIDFDTLLLPDQLTLP
LLWGGIALALLGFSPVSLSDAVIGAMVGYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPVIVLLSSVVGV
IFGLIQLRQQKKGIDMAFPFGPYLAIAGWFALLWGDKVIDWYFTTWVGQPL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=1078965 ACKQF3_RS02380 WP_000418750.1 500007..500882(-) (pilD) [Vibrio cholerae strain N19-2759]
ATGGAACTGTTTTACTTCTACCCTTGGCTGTTTCCGGTGCTCGCCACGCTGTTTGGCTTGATTGTCGGCAGCTTTCTCAA
TGTGGTGATCTATCGCTTACCCAAAATCATGGAGCGTGAATGGCGCGCGGAATGTGCGGCGAGTTTTCCTGAATATGGCA
TCACGCCACCAGAGGGTAAACTGACCCTCAGTTTGCCGCGTTCCACTTGCCCACACTGCCAAACGCCGATTCGCGTCATT
GATAATATCCCGCTACTGAGTTGGCTAGCGCTGCGCGGTCAATGCTCACACTGTAAAGCGCCGATCAGCGCTCGTTATCC
CTTGATTGAGCTACTCACTGCCCTCATGAGCTTAGTGATTGCTACTCACTTTCCGTTCGGGGTGTTTGCCGTGGCGCTGC
TGTTTTTCAGCTATGTATTGATTGCGGCAACCTTCATCGACTTCGATACCCTGTTGCTGCCCGACCAATTAACGCTACCT
TTACTGTGGGGCGGTATTGCACTGGCACTGCTTGGTTTTTCTCCGGTTTCACTCAGTGATGCGGTGATCGGAGCCATGGT
GGGTTATCTCTCGCTGTGGTCAATTTACTGGCTATTTAAACTGCTGACAGGTAAAGAAGGCATGGGTTATGGCGATTTCA
AATTGCTCGCCGCTCTCGGCGCTTGGCTGGGTTGGCAGCAGTTGCCTGTCATCGTACTGCTCTCATCGGTGGTTGGGGTG
ATTTTCGGTTTAATCCAACTGCGCCAGCAGAAAAAAGGTATCGATATGGCCTTTCCGTTTGGCCCTTATCTCGCCATCGC
GGGATGGTTTGCCTTGCTGTGGGGCGATAAGGTAATTGATTGGTACTTCACCACTTGGGTAGGACAACCGTTATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

99.656

100

0.997
  pilD Vibrio campbellii strain DS40M4

75

98.969

0.742
  pilD Acinetobacter nosocomialis M2

53.676

93.471

0.502
  pilD Acinetobacter baumannii D1279779

53.309

93.471

0.498
  pilD Neisseria gonorrhoeae MS11

44.444

98.969

0.44

Multiple sequence alignment