Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACI537_RS03695 Genome accession   NZ_CP173426
Coordinates   860735..861985 (-) Length   416 a.a.
NCBI ID   WP_404983615.1    Uniprot ID   -
Organism   Cobetia marina strain KMM 1449     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 855735..866985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI537_RS03670 (ACI537_03670) argJ 856476..857699 (+) 1224 WP_084209208.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACI537_RS03675 (ACI537_03675) - 857808..858761 (+) 954 WP_404983613.1 Nudix family hydrolase -
  ACI537_RS03680 (ACI537_03680) yacG 858890..859135 (-) 246 WP_141392184.1 DNA gyrase inhibitor YacG -
  ACI537_RS03685 (ACI537_03685) coaE 859128..859775 (-) 648 WP_404983614.1 dephospho-CoA kinase -
  ACI537_RS03690 (ACI537_03690) pilD 859775..860635 (-) 861 WP_084209205.1 A24 family peptidase Machinery gene
  ACI537_RS03695 (ACI537_03695) pilC 860735..861985 (-) 1251 WP_404983615.1 type II secretion system F family protein Machinery gene
  ACI537_RS03700 (ACI537_03700) pilB 862219..863955 (-) 1737 WP_404983616.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACI537_RS03705 (ACI537_03705) - 864716..865159 (+) 444 WP_136938320.1 pilin -
  ACI537_RS03710 (ACI537_03710) - 865231..866958 (+) 1728 WP_404983617.1 hypothetical protein -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45242.92 Da        Isoelectric Point: 9.9181

>NTDB_id=1072228 ACI537_RS03695 WP_404983615.1 860735..861985(-) (pilC) [Cobetia marina strain KMM 1449]
MTTDMATIRTAKKDKKKAGIETWQWTGKNSRGEKVKGELMSANVDQVKNTLVGQGIVVKRLRKKSALFGGSKKVSGKDVT
MFARQMATMIRAGVPVLQAFGIVAESMKSPGMRHLVEDLMSQVGAGASFSEALRQHPQHFDNLFSNLVAAGEQAGALDKM
LDRVATYKEKIESLKARVKKALYYPIAVIGVGIGVTAILLIKVVPQFESLFQGFGAELPAFTQMTIRLSEYAQSYWYIAL
MAIILAGILVAQGMKRSDKFAYAMHRFMLKIPVLGDILDKSSVARYSRTLATTFQAGVPLVESLDTAAGASGNKVYERAI
AQIKEDVSTGQQLNFAMRNTQLFPTLAVQMVAIGEEAGSLDAMLNKVADFYEEDVDNKVDALTSLLEPLIIVVLGTLVGG
LVVSMYLPIFELGNAI

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1072228 ACI537_RS03695 WP_404983615.1 860735..861985(-) (pilC) [Cobetia marina strain KMM 1449]
ATGACAACCGACATGGCGACGATCAGAACTGCCAAGAAAGACAAGAAGAAGGCGGGCATAGAAACCTGGCAATGGACGGG
CAAGAATTCGCGTGGTGAAAAGGTCAAGGGCGAGTTGATGTCCGCCAATGTCGACCAGGTGAAGAATACGCTGGTCGGCC
AAGGTATCGTCGTCAAGCGTTTGCGCAAGAAATCCGCCCTGTTCGGTGGCAGCAAGAAAGTCAGCGGCAAGGATGTCACC
ATGTTTGCTCGACAGATGGCGACGATGATTCGCGCCGGCGTCCCCGTTCTACAGGCCTTCGGTATCGTTGCCGAGAGCAT
GAAAAGTCCAGGCATGCGCCACCTGGTGGAAGATCTGATGAGTCAGGTCGGTGCGGGCGCCAGCTTCTCGGAAGCGCTGC
GCCAGCACCCGCAACATTTTGACAATCTCTTCTCCAACCTGGTCGCCGCAGGTGAGCAGGCCGGAGCCCTCGACAAGATG
CTGGACCGCGTCGCGACCTACAAGGAGAAGATCGAATCCCTCAAGGCTCGCGTGAAAAAAGCGCTCTACTACCCCATCGC
CGTCATTGGCGTAGGCATCGGGGTGACGGCGATTCTGTTGATCAAGGTTGTCCCCCAATTCGAGAGCCTGTTCCAGGGCT
TTGGTGCTGAACTACCTGCATTCACCCAAATGACTATACGGTTATCCGAGTATGCTCAGAGCTACTGGTATATCGCTCTG
ATGGCAATAATTCTGGCAGGCATACTTGTCGCTCAAGGCATGAAGCGCTCCGACAAGTTCGCCTATGCCATGCATCGCTT
CATGCTCAAGATTCCGGTGCTGGGTGATATTCTCGACAAGTCATCCGTGGCACGTTATTCACGCACTCTCGCCACCACCT
TTCAGGCTGGCGTGCCGCTGGTAGAATCACTGGATACTGCTGCAGGCGCTTCCGGCAACAAGGTTTATGAACGCGCGATC
GCCCAGATCAAGGAGGATGTCTCCACGGGTCAGCAGCTCAACTTTGCCATGCGCAATACTCAGCTATTTCCCACGCTGGC
GGTGCAGATGGTGGCCATCGGAGAAGAAGCCGGCTCTCTGGATGCCATGCTCAACAAGGTGGCCGACTTCTATGAAGAAG
ACGTCGATAACAAGGTCGATGCCCTGACCTCACTGCTGGAACCCCTGATCATCGTGGTGCTGGGCACTTTGGTTGGCGGG
CTGGTGGTGTCGATGTATCTGCCGATCTTCGAACTCGGCAACGCTATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(82-205)

Type II secretion system (T2SS), protein F (T2SSF)

(287-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.962

94.952

0.541
  pilC Acinetobacter baylyi ADP1

52.826

97.837

0.517
  pilC Acinetobacter baumannii D1279779

52.58

97.837

0.514
  pilC Legionella pneumophila strain ERS1305867

51.597

97.837

0.505
  pilC Vibrio campbellii strain DS40M4

44.975

95.673

0.43
  pilC Vibrio cholerae strain A1552

45.088

95.433

0.43
  pilG Neisseria meningitidis 44/76-A

41.951

98.558

0.413
  pilG Neisseria gonorrhoeae MS11

41.951

98.558

0.413

Multiple sequence alignment