Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACI537_RS03690 Genome accession   NZ_CP173426
Coordinates   859775..860635 (-) Length   286 a.a.
NCBI ID   WP_084209205.1    Uniprot ID   -
Organism   Cobetia marina strain KMM 1449     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 854775..865635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI537_RS03670 (ACI537_03670) argJ 856476..857699 (+) 1224 WP_084209208.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACI537_RS03675 (ACI537_03675) - 857808..858761 (+) 954 WP_404983613.1 Nudix family hydrolase -
  ACI537_RS03680 (ACI537_03680) yacG 858890..859135 (-) 246 WP_141392184.1 DNA gyrase inhibitor YacG -
  ACI537_RS03685 (ACI537_03685) coaE 859128..859775 (-) 648 WP_404983614.1 dephospho-CoA kinase -
  ACI537_RS03690 (ACI537_03690) pilD 859775..860635 (-) 861 WP_084209205.1 A24 family peptidase Machinery gene
  ACI537_RS03695 (ACI537_03695) pilC 860735..861985 (-) 1251 WP_404983615.1 type II secretion system F family protein Machinery gene
  ACI537_RS03700 (ACI537_03700) pilB 862219..863955 (-) 1737 WP_404983616.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACI537_RS03705 (ACI537_03705) - 864716..865159 (+) 444 WP_136938320.1 pilin -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31009.24 Da        Isoelectric Point: 8.4709

>NTDB_id=1072227 ACI537_RS03690 WP_084209205.1 859775..860635(-) (pilD) [Cobetia marina strain KMM 1449]
MDSLASLSPALQACLAGIFGLLIGSFLNVVITRLPVMMMRQWRAEAREALELEPEASPRFNLLVPASRCPGCDTPIKWHD
NLPVIGWLKRRGRCASCNTRISAQYPLVELAGGALGASIALIYGLEAQSLWIFGACLTLLVLSVIDFRTQLLPDAITLPL
LWAGLAYQLLFQPLMLPSAVIGAMAGYLVLWSFYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQWLPLLLILSAGLGAVL
GILLQLLVPRLRGAPMPFGPYLAVAGWIALLFGTPLMSLYLSVIGA

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1072227 ACI537_RS03690 WP_084209205.1 859775..860635(-) (pilD) [Cobetia marina strain KMM 1449]
GTGGATTCTCTCGCCTCTCTCTCCCCCGCTCTTCAGGCCTGCCTCGCGGGGATTTTCGGCCTGTTGATCGGCAGTTTTCT
GAATGTAGTGATCACACGCCTGCCGGTGATGATGATGCGTCAGTGGCGTGCAGAAGCACGTGAAGCGCTGGAACTGGAGC
CGGAAGCGTCGCCACGCTTCAATCTGTTGGTGCCTGCCTCACGCTGCCCTGGCTGCGACACCCCAATCAAATGGCATGAC
AATCTCCCTGTCATCGGCTGGCTGAAACGCCGCGGCCGCTGCGCGAGCTGCAATACCCGTATCAGTGCACAGTATCCACT
GGTGGAGCTCGCCGGTGGCGCGCTCGGCGCTTCCATCGCGTTGATCTACGGCCTGGAAGCACAGAGCCTGTGGATCTTCG
GCGCCTGTCTGACACTGCTGGTGTTGTCCGTGATCGATTTCCGCACCCAGCTGTTGCCTGATGCCATCACGCTACCGTTG
CTGTGGGCCGGACTCGCCTACCAACTGCTTTTCCAGCCATTGATGCTGCCAAGTGCCGTGATTGGTGCCATGGCCGGCTA
TCTGGTGCTGTGGAGCTTCTACTGGCTGTTCAAGCTGGTGACTGGCAAGGAAGGCATGGGCTATGGCGATTTCAAGCTGT
TGGCGGCACTGGGCGCCTGGCTGGGCTGGCAGTGGTTGCCACTGCTGTTGATCCTCTCTGCGGGACTCGGCGCAGTACTC
GGCATCCTGTTGCAACTGCTGGTACCGCGCCTGCGGGGAGCCCCCATGCCATTCGGCCCTTATCTGGCCGTGGCAGGCTG
GATCGCACTGCTGTTCGGCACCCCGCTGATGAGCCTCTACCTCAGCGTGATAGGTGCCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-121)

Type IV leader peptidase family (Peptidase_A24)

(136-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

51.736

100

0.521
  pilD Vibrio campbellii strain DS40M4

47.857

97.902

0.469
  pilD Neisseria gonorrhoeae MS11

48.175

95.804

0.462
  pilD Acinetobacter baumannii D1279779

48.507

93.706

0.455
  pilD Acinetobacter nosocomialis M2

47.761

93.706

0.448

Multiple sequence alignment