Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACI3L7_RS00850 Genome accession   NZ_CP173387
Coordinates   207058..208281 (+) Length   407 a.a.
NCBI ID   WP_050905227.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB135     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 202058..213281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L7_RS00830 (ACI3L7_00830) ampD 203077..203628 (-) 552 WP_404970137.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACI3L7_RS00835 (ACI3L7_00835) nadC 203721..204608 (+) 888 WP_012128875.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACI3L7_RS00840 (ACI3L7_00840) pilA 204874..205338 (+) 465 WP_051118346.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACI3L7_RS00845 (ACI3L7_00845) pilB 205338..207023 (+) 1686 WP_404970138.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACI3L7_RS00850 (ACI3L7_00850) pilC 207058..208281 (+) 1224 WP_050905227.1 type II secretion system F family protein Machinery gene
  ACI3L7_RS00855 (ACI3L7_00855) pilD 208354..209223 (+) 870 WP_012128879.1 A24 family peptidase Machinery gene
  ACI3L7_RS00860 (ACI3L7_00860) coaE 209224..209838 (+) 615 WP_012128880.1 dephospho-CoA kinase -
  ACI3L7_RS00865 (ACI3L7_00865) zapD 209866..210606 (+) 741 WP_012128881.1 cell division protein ZapD -
  ACI3L7_RS00870 (ACI3L7_00870) yacG 210669..210863 (+) 195 WP_404970139.1 DNA gyrase inhibitor YacG -
  ACI3L7_RS00875 (ACI3L7_00875) rplS 211379..211732 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  ACI3L7_RS00880 (ACI3L7_00880) trmD 211774..212517 (-) 744 WP_005425529.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACI3L7_RS00885 (ACI3L7_00885) rimM 212545..213093 (-) 549 WP_005534055.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44980.25 Da        Isoelectric Point: 10.3971

>NTDB_id=1071901 ACI3L7_RS00850 WP_050905227.1 207058..208281(+) (pilC) [Vibrio campbellii strain LB135]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEIEVRERLDAQHIKIKKLKKGSISFITKISHRVKGKDITIFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFTGFGADLPAFTQMVLNLSAWTQNWGPFIGLSFVSLLISG
KIMSQRSDSFRLLAARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCHVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1071901 ACI3L7_RS00850 WP_050905227.1 207058..208281(+) (pilC) [Vibrio campbellii strain LB135]
ATGAAAACCATCGCTCCTCAACTCAAGAACTACCGTTGGAAAGGCATTAATAGCTCGGGTAAAAAAACCTCTGGAAACGT
GCTCGCCATGACCGAAATCGAGGTAAGAGAGCGCCTCGACGCTCAACACATCAAGATAAAGAAACTGAAGAAAGGCAGCA
TTTCTTTTATCACCAAGATCAGTCATCGCGTCAAAGGCAAAGACATCACGATATTTACTCGCCAAATTGCCACTATGCTA
ATGACGGGCGTACCGATTGTTCAGGCACTTAAGTTGGTTTCAGAGAACCACAAAAAAGCCGAGATGAAATCGATTCTGAT
GAGTGTCACACGAGCGGTAGAGGCAGGGACACCGATGTCGAAAGCCATGCGCACTGCCAGTACACATTTTGATCCGCTTT
ATACAGACCTAATCGCGACTGGTGAACAGTCCGGAAACCTATCTCAAGTCTTTGAGCGTTTGGCAACTTATCGAGAAAAG
AGCGAGCAGTTGCGCGCAAAAGTGATTAAAGCGCTCATTTACCCAGCGATGGTGGTTTTAGTAGCGCTTGGGGTTTCCTA
TTTAATGCTGACTAGAGTTATCCCTGAGTTTGAAAAGATGTTTACAGGTTTTGGAGCCGACTTACCCGCCTTTACTCAGA
TGGTACTCAACCTCTCTGCTTGGACCCAAAACTGGGGCCCTTTTATTGGACTGAGTTTTGTGAGCCTGCTTATTTCCGGC
AAAATTATGTCGCAGCGATCCGATTCATTTCGCCTTTTAGCTGCGCGTTCGAGTTTAAGAGTCCCTATCTTGGGGCCAGT
ATTATCCAAAGCAGCCATTGCCAAGTTTAGCCGTACTTTAGCAACCAGCTTTAGTGCGGGTATTCCAATTCTCACCGCAT
TAAAAACCACCTCAAAAACCTCCGGTAACATGCACTATCAATTAGCAATTGAAGAAGTGTATCGAGACACTGCAGCTGGT
ATGCCGATGTATATTGCCATGCGTAACTGTCACGTTTTCCCTGAGCTAGTACTGCAAATGGTCATGATAGGTGAAGAGTC
AGGTCGATTGGATGACATGCTCAACAAGATAGCCGCTATTTATGAGTTCGAGGTGGATAATACCGTTGATAATCTGAGTA
AGATTTTAGAACCATTGATCATCGTCTTTCTTGGCGTGGTGGTTGGCGGTCTAGTCACAGCAATGTACTTACCAATCTTT
AATTTGATGAGCGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

99.754

100

0.998
  pilC Vibrio cholerae strain A1552

74

98.28

0.727
  pilC Acinetobacter baylyi ADP1

42.462

97.789

0.415
  pilC Acinetobacter baumannii D1279779

40.447

99.017

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilC Legionella pneumophila strain ERS1305867

39.604

99.263

0.393
  pilG Neisseria gonorrhoeae MS11

39.066

100

0.391
  pilG Neisseria meningitidis 44/76-A

38.235

100

0.383

Multiple sequence alignment